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234,785 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Potempa, J."

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Search Summary

This query matches 19 Structures.

Refinements

Structure Determination Methodology

experimental (19)

Scientific Name of Source Organism

	Archaeoglobus fulgidus DSM 4304 (8)
	Homo sapiens (5)
	Kunjin virus (3)
	Coxsackievirus B3 (strain Nancy) (2)
	Thermus (1)

Taxonomy

	Archaea (8)
	Eukaryota (5)
	Riboviria (5)
	Bacteria (1)
	Riboviria (RNA viruses and viroids) (1)

Experimental Method

X-RAY DIFFRACTION (19)

Polymer Entity Type

Protein (19)

Refinement Resolution (Å)

	1.5 - 2.0 (4)
	2.0 - 2.5 (6)
	2.5 - 3.0 (8)
	3.0 - 3.5 (1)

Release Date

	2005 - 2009 (8)
	2015 - 2019 (8)
	2020 - 2024 (3)

Enzyme Classification Name

	Hydrolases (10)
	Transferases (6)
	Oxidoreductases (1)

Symmetry Type

	Cyclic (12)
	Asymmetric (7)

SCOP Classification

	Multi-domain proteins (alpha and beta) (10)
	Alpha and beta proteins (a+b) (3)
	Coiled coil proteins (3)
	Alpha and beta proteins (a/b) (1)
	Artifacts (2)

AllSelected

1 to 19 of 19 Structures

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2HCN \| pdb_00002hcn	Download File View File

Crystal structure of RNA dependent RNA polymerase domain from west nile virus

Egloff, M.P., Malet, H., Marseilles Structural Genomics Program @ AFMB (MSGP)

(2007) J Biological Chem 282: 10678-10689

Released	2007-02-06
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Kunjin virus
Macromolecule	RNA-directed RNA polymerase (NS5) (protein)
Unique Ligands	CA, ZN

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2HCS \| pdb_00002hcs	Download File View File

Crystal structure of RNA dependant RNA polymerase domain of West Nile virus

Egloff, M.P., Malet, H., Marseilles Structural Genomics Program @ AFMB (MSGP)

(2007) J Biological Chem 282: 10678-10689

Released	2007-02-06
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Kunjin virus
Macromolecule	RNA-directed RNA polymerase (NS5) (protein)
Unique Ligands	ZN

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2HFZ \| pdb_00002hfz	Download File View File

Crystal structure of RNA dependent RNA polymerase domain from West Nile virus

Egloff, M.P., Malet, H., Marseilles Structural Genomics Program @ AFMB (MSGP)

(2007) J Biological Chem 282: 10678-10689

Released	2007-02-06
Method	X-RAY DIFFRACTION 3 Å
Organisms	Kunjin virus
Macromolecule	RNA-directed RNA polymerase(NS5) (protein)
Unique Ligands	MG, ZN

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2ORJ \| pdb_00002orj	Download File View File

crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein D in complex with N-acetyl mannosamine

Head, J.F.

(2007) Biochemistry 46: 5160-5169

Released	2007-05-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Pulmonary surfactant-associated protein D (protein)
Unique Ligands	BM3, CA

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2ORK \| pdb_00002ork	Download File View File

crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein D in complex with inositol-1-phosphate

Head, J.F.

(2007) Biochemistry 46: 5160-5169

Released	2007-05-08
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Homo sapiens
Macromolecule	Pulmonary surfactant-associated protein D (protein)
Unique Ligands	CA, IPD

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2OS9 \| pdb_00002os9	Download File View File

crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein D in complex with myoinositol

Head, J.F.

(2007) Biochemistry 46: 5160-5169

Released	2007-05-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Pulmonary surfactant-associated protein D (protein)
Unique Ligands	CA, INS

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3CDU \| pdb_00003cdu	Download File View File

Crystal structure of coxsackievirus B3 RNA-dependent RNA polymerase (3Dpol) in complex with a pyrophosphate

Gruez, A., Selisko, B., Roberts, M., Bricogne, G., Bussetta, C., Canard, B.

(2008) J Virol 82: 9577-9590

Released	2008-07-22
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Coxsackievirus B3 (strain Nancy)
Macromolecule	RNA-directed RNA polymerase 3D-POL (protein)
Unique Ligands	ACT, CL, GOL, POP, SO4

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3CDW \| pdb_00003cdw	Download File View File

Crystal structure of coxsackievirus B3 RNA-dependent RNA polymerase (3Dpol) in complex with protein primer VPg and a pyrophosphate

Gruez, A., Selisko, B., Roberts, M., Bricogne, G., Bussetta, C., Canard, B.

(2008) J Virol 82: 9577-9590

Released	2008-07-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Coxsackievirus B3 (strain Nancy)
Macromolecule	Protein 3B (protein) RNA-directed RNA polymerase 3D-POL (protein)
Unique Ligands	ACT, CL, GOL, POP

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6B5Z \| pdb_00006b5z	Download File View File

IMPase (AF2372) with 25 mM Asp

Goldstein, R.I., Roberts, M.

To be published

Released	2018-10-03
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Archaeoglobus fulgidus DSM 4304
Macromolecule	Fructose-1,6-bisphosphatase/inositol-1-monophosphatase (protein)
Unique Ligands	ASP, INS, MG, SO4

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6B60 \| pdb_00006b60	Download File View File

IMPase (AF2372) with 25 mM Glutamate

Goldstein, R.I., Roberts, M.F.

To be published

Released	2018-10-03
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Archaeoglobus fulgidus DSM 4304
Macromolecule	Fructose-1,6-bisphosphatase/inositol-1-monophosphatase (protein)
Unique Ligands	GLU, MG, PEG, SO4

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6B61 \| pdb_00006b61	Download File View File

IMPase (AF2372) with 25 mM Asp

Goldstein, R.I., Roberts, M.

To be published

Released	2018-10-03
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Archaeoglobus fulgidus DSM 4304
Macromolecule	Fructose-1,6-bisphosphatase/inositol-1-monophosphatase (protein)
Unique Ligands	ASP, MG, PO4

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6B62 \| pdb_00006b62	Download File View File

IMPase (AF2372) with 400 mM Glutamate

Goldstein, R.I., Roberts, M.

To be published

Released	2018-10-03
Method	X-RAY DIFFRACTION 2.003 Å
Organisms	Archaeoglobus fulgidus DSM 4304
Macromolecule	Fructose-1,6-bisphosphatase/inositol-1-monophosphatase (protein)
Unique Ligands	GLU, GOL, MG, SO4

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6B63 \| pdb_00006b63	Download File View File

IMPase (AF2372) with 25 mM Asp

Goldstein, R.I., Roberts, M.

To be published

Released	2018-10-03
Method	X-RAY DIFFRACTION 2.696 Å
Organisms	Archaeoglobus fulgidus DSM 4304
Macromolecule	Fructose-1,6-bisphosphatase/inositol-1-monophosphatase (protein)
Unique Ligands	CU7, EPE, MG, PO4, SO4

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6B64 \| pdb_00006b64	Download File View File

IMPase (AF2372) with 25 mM Asp

Goldstein, R.I., Roberts, M.

To be published

Released	2018-10-03
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Archaeoglobus fulgidus DSM 4304
Macromolecule	Fructose-1,6-bisphosphatase/inositol-1-monophosphatase (protein)
Unique Ligands	ASP, MG, SO4

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6B65 \| pdb_00006b65	Download File View File

IMPase (AF2372) R92Q/K164E

Goldstein, R.I., Roberts, M.

To be published

Released	2018-10-03
Method	X-RAY DIFFRACTION 2.702 Å
Organisms	Archaeoglobus fulgidus DSM 4304
Macromolecule	Fructose-1,6-bisphosphatase/inositol-1-monophosphatase (protein)
Unique Ligands	IPA, MG, PEG, SO4

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6B66 \| pdb_00006b66	Download File View File

IMPase (AF2372) R92Q/K164E with 400 mM Glutamate

Goldstein, R.I., Roberts, M.

To be published

Released	2018-10-03
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Archaeoglobus fulgidus DSM 4304
Macromolecule	Fructose-1,6-bisphosphatase/inositol-1-monophosphatase (protein)
Unique Ligands	GLU, GOL, MG, PGE, SO4

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6ZYF \| pdb_00006zyf	Download File View File

Notum_Ghrelin complex

Zhao, Y., Jones, E.Y.

(2021) Mol Metab 49: 101201-101201

Released	2021-03-10
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Homo sapiens
Macromolecule	Palmitoleoyl-protein carboxylesterase NOTUM (protein)
Unique Ligands	EDO, K4Q, NAG

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8P8C \| pdb_00008p8c	Download File View File

HUMAN CD38 ECTODOMAIN BOUND TO COMPOUND 9-ADPR ADDUCT

Rangel, V., Zebisch, M., Doyle, K.J., Burli, R.W.

(2023) Helvetica Chim Acta 106:

Released	2023-07-26
Method	X-RAY DIFFRACTION 1.653 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 (protein)
Unique Ligands	X5T

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8PRU \| pdb_00008pru	Download File View File

Engineered form of T thermophiles AHIR

Roberts, M., Powell, A., Lewis, C., Sinclair, J.

To be published

Released	2024-09-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermus
Macromolecule	Ketol-acid reductoisomerase (NADP(+)) (protein)
Unique Ligands	MG, SO4

1 to 19 of 19 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2HCN | pdb_00002hcn

Crystal structure of RNA dependent RNA polymerase domain from west nile virus

2HCS | pdb_00002hcs

Crystal structure of RNA dependant RNA polymerase domain of West Nile virus

2HFZ | pdb_00002hfz

Crystal structure of RNA dependent RNA polymerase domain from West Nile virus

2ORJ | pdb_00002orj

crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein D in complex with N-acetyl mannosamine

2ORK | pdb_00002ork

crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein D in complex with inositol-1-phosphate

2OS9 | pdb_00002os9

crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein D in complex with myoinositol

3CDU | pdb_00003cdu

Crystal structure of coxsackievirus B3 RNA-dependent RNA polymerase (3Dpol) in complex with a pyrophosphate

3CDW | pdb_00003cdw

Crystal structure of coxsackievirus B3 RNA-dependent RNA polymerase (3Dpol) in complex with protein primer VPg and a pyrophosphate

6B5Z | pdb_00006b5z

IMPase (AF2372) with 25 mM Asp

6B60 | pdb_00006b60

IMPase (AF2372) with 25 mM Glutamate

6B61 | pdb_00006b61

IMPase (AF2372) with 25 mM Asp

6B62 | pdb_00006b62

IMPase (AF2372) with 400 mM Glutamate

6B63 | pdb_00006b63

IMPase (AF2372) with 25 mM Asp

6B64 | pdb_00006b64

IMPase (AF2372) with 25 mM Asp

6B65 | pdb_00006b65

IMPase (AF2372) R92Q/K164E

6B66 | pdb_00006b66

IMPase (AF2372) R92Q/K164E with 400 mM Glutamate

6ZYF | pdb_00006zyf

Notum_Ghrelin complex

8P8C | pdb_00008p8c

HUMAN CD38 ECTODOMAIN BOUND TO COMPOUND 9-ADPR ADDUCT

8PRU | pdb_00008pru

Engineered form of T thermophiles AHIR

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2HCN | pdb_00002hcn

2HCS | pdb_00002hcs

2HFZ | pdb_00002hfz

2ORJ | pdb_00002orj

2ORK | pdb_00002ork

2OS9 | pdb_00002os9

3CDU | pdb_00003cdu

3CDW | pdb_00003cdw

6B5Z | pdb_00006b5z

6B60 | pdb_00006b60

6B61 | pdb_00006b61

6B62 | pdb_00006b62

6B63 | pdb_00006b63

6B64 | pdb_00006b64

6B65 | pdb_00006b65

6B66 | pdb_00006b66

6ZYF | pdb_00006zyf

8P8C | pdb_00008p8c

8PRU | pdb_00008pru