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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Poduch, E."

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Search Summary

This query matches 13 Structures.

Refinements

Structure Determination Methodology

experimental (13)

Scientific Name of Source Organism

	Homo sapiens (6)
	Plasmodium falciparum 3D7 (4)
	Methanothermobacter thermautotrophicus (2)
	Methanothermobacter thermautotrophicus str. Delta H (1)

Taxonomy

	Eukaryota (10)
	Archaea (3)

Experimental Method

X-RAY DIFFRACTION (13)

Polymer Entity Type

Protein (13)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (9)

Release Date

	2005 - 2009 (7)
	2010 - 2014 (6)

Enzyme Classification Name

	Lyases (13)
	Transferases (6)

Symmetry Type

Cyclic (13)

SCOP Classification

	Alpha and beta proteins (a/b) (7)
	Artifacts (4)

AllSelected

1 to 13 of 13 Structures

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1X1Z \| pdb_00001x1z	Download File View File

Orotidine 5'-monophosphate decarboxylase (odcase) complexed with BMP (produced from 6-cyanoump)

Fujihashi, M., Bello, A.M., Poduch, E., Wei, L., Annedi, S.C., Pai, E.F., Kotra, L.P.

(2005) J Am Chem Soc 127: 15048-15050

Released	2005-12-06
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	Orotidine 5'-phosphate decarboxylase (protein)
Unique Ligands	BMP, GOL

Explore in 3D

2E6Y \| pdb_00002e6y	Download File View File

Covalent complex of orotidine 5'-monophosphate decarboxylase (ODCase) with 6-Iodo-UMP

Fujihashi, M., Bello, A.M., Kotra, L.P., Pai, E.F.

(2007) J Med Chem 50: 915-921

Released	2007-02-27
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	Orotidine 5'-phosphate decarboxylase (protein)
Unique Ligands	GOL, U5P

Explore in 3D

2Q8Z \| pdb_00002q8z	Download File View File

Crystal structure of Plasmodium falciparum orotidine 5'-phosphate decarboxylase complexed with 6-amino-UMP

Liu, Y., Lau, W., Bello, A.M., Kotra, L.P., Hui, R., Pai, E.F.

(2008) J Med Chem 51: 439-448

Released	2008-01-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	Orotidine-monophosphate-decarboxylase (protein)
Unique Ligands	7PE, NUP, PEG, SO4

Explore in 3D

2QAF \| pdb_00002qaf	Download File View File

Crystal structure of Plasmodium falciparum orotidine 5'-phosphate decarboxylase covalently modified by 6-iodo-UMP

Liu, Y., Lau, W., Bello, A.M., Kotra, L.P., Hui, R., Pai, E.F.

(2008) J Med Chem 51: 439-448

Released	2008-04-29
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	Orotidine 5' monophosphate decarboxylase (protein)
Unique Ligands	SO4, U5P

Explore in 3D

3BAR \| pdb_00003bar	Download File View File

Crystal structure of Plasmodium falciparum orotidine 5'-phosphate decarboxylase covalently modified by 6-azido-UMP

Liu, Y., Bello, A.M., Poduch, E., Lau, W., Kotra, L.P., Pai, E.F.

(2008) J Med Chem 51: 439-448

Released	2008-01-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	Orotidine 5'-phosphate decarboxylase (protein)
Unique Ligands	U5P

Explore in 3D

3G3D \| pdb_00003g3d	Download File View File

Crystal Structure of Human Orotidine 5'-monophosphate Decarboxylase Covalently Modified by 5-fluoro-6-azido-UMP

Liu, Y., Tang, H.L., Bello, A., Poduch, E., Kotra, L., Pai, E.

(2009) J Med Chem 52: 1648-1658

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Uridine 5'-monophosphate synthase (protein)
Unique Ligands	5FU, GOL, SO4

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3G3M \| pdb_00003g3m	Download File View File

Crystal Structure of Human Orotidine 5'-monophosphate Decarboxylase Covalently Modified by 5-fluoro-6-iodo-UMP

Liu, Y., Tang, H.L., Bello, A.M., Poduch, E., Kotra, L.P., Pai, E.F.

(2009) J Med Chem 52: 1648-1658

Released	2009-03-03
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	Uridine 5'-monophosphate synthase (protein)
Unique Ligands	5FU

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3MI2 \| pdb_00003mi2	Download File View File

Crystal structure of human orotidine-5'-monophosphate decarboxylase complexed with pyrazofurin monophosphate

Liu, Y., To, T., Kotra, L.P., Pai, E.F.

(2010) Bioorg Med Chem 18: 4032-4041

Released	2010-05-26
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Homo sapiens
Macromolecule	Uridine 5'-monophosphate synthase (protein)
Unique Ligands	PFU

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3MO7 \| pdb_00003mo7	Download File View File

Crystal structure of human orotidine 5'-monophosphate decarboxylase covalently modified by 2'-fluoro-6-iodo-UMP

Liu, Y., Kotra, L.P., Pai, E.F.

(2011) J Med Chem 54: 2891-2901

Released	2011-04-06
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Homo sapiens
Macromolecule	Uridine 5'-monophosphate synthase (protein)
Unique Ligands	GOL, UFT

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3S9Y \| pdb_00003s9y	Download File View File

Crystal Structure of P. falciparum orotidine 5'-monophosphate decarboxylase complexed with 5-fluoro-6-amino-UMP in space group P21, produced from 5-fluoro-6-azido-UMP

Liu, Y., Kotra, L.P., Pai, E.F.

(2009) J Med Chem 52: 1648-1658

Released	2012-04-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	Orotidine 5'-phosphate decarboxylase (protein)
Unique Ligands	FNU, P6G, PEG, PGE, SO4

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3SEC \| pdb_00003sec	Download File View File

Crystal structure of Methanothermobacter thermautotrophicus orotidine 5'-monophosphate decarboxylase complexed with pyrazofurin monophosphate

Liu, Y., Kotra, L.P., Pai, E.F.

To be published

Released	2012-04-25
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Methanothermobacter thermautotrophicus str. Delta H
Macromolecule	Orotidine 5'-phosphate decarboxylase (protein)
Unique Ligands	GOL, PFU

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4HIB \| pdb_00004hib	Download File View File

Crystal structure of human orotidine 5'-monophosphate decarboxylase complexed with CMP-N4-OH

To, T.K., Kotra, L.P., Pai, E.F.

(2012) J Med Chem 55: 9988-9997

Released	2012-11-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Uridine 5'-monophosphate synthase (protein)
Unique Ligands	16B, CL, GOL

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4HKP \| pdb_00004hkp	Download File View File

Crystal structure of human orotidine 5'-monophosphate decarboxylase complexed with CMP-N3-oxide

To, T.K., Kotra, L.P., Pai, E.F.

(2012) J Med Chem 55: 9988-9997

Released	2012-11-14
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Uridine 5'-monophosphate synthase (protein)
Unique Ligands	16B, GOL, TKW

1 to 13 of 13 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1X1Z | pdb_00001x1z

Orotidine 5'-monophosphate decarboxylase (odcase) complexed with BMP (produced from 6-cyanoump)

2E6Y | pdb_00002e6y

Covalent complex of orotidine 5'-monophosphate decarboxylase (ODCase) with 6-Iodo-UMP

2Q8Z | pdb_00002q8z

Crystal structure of Plasmodium falciparum orotidine 5'-phosphate decarboxylase complexed with 6-amino-UMP

2QAF | pdb_00002qaf

Crystal structure of Plasmodium falciparum orotidine 5'-phosphate decarboxylase covalently modified by 6-iodo-UMP

3BAR | pdb_00003bar

Crystal structure of Plasmodium falciparum orotidine 5'-phosphate decarboxylase covalently modified by 6-azido-UMP

3G3D | pdb_00003g3d

Crystal Structure of Human Orotidine 5'-monophosphate Decarboxylase Covalently Modified by 5-fluoro-6-azido-UMP

3G3M | pdb_00003g3m

Crystal Structure of Human Orotidine 5'-monophosphate Decarboxylase Covalently Modified by 5-fluoro-6-iodo-UMP

3MI2 | pdb_00003mi2

Crystal structure of human orotidine-5'-monophosphate decarboxylase complexed with pyrazofurin monophosphate

3MO7 | pdb_00003mo7

Crystal structure of human orotidine 5'-monophosphate decarboxylase covalently modified by 2'-fluoro-6-iodo-UMP

3S9Y | pdb_00003s9y

Crystal Structure of P. falciparum orotidine 5'-monophosphate decarboxylase complexed with 5-fluoro-6-amino-UMP in space group P21, produced from 5-fluoro-6-azido-UMP

3SEC | pdb_00003sec

Crystal structure of Methanothermobacter thermautotrophicus orotidine 5'-monophosphate decarboxylase complexed with pyrazofurin monophosphate

4HIB | pdb_00004hib

Crystal structure of human orotidine 5'-monophosphate decarboxylase complexed with CMP-N4-OH

4HKP | pdb_00004hkp

Crystal structure of human orotidine 5'-monophosphate decarboxylase complexed with CMP-N3-oxide

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1X1Z | pdb_00001x1z

2E6Y | pdb_00002e6y

2Q8Z | pdb_00002q8z

2QAF | pdb_00002qaf

3BAR | pdb_00003bar

3G3D | pdb_00003g3d

3G3M | pdb_00003g3m

3MI2 | pdb_00003mi2

3MO7 | pdb_00003mo7

3S9Y | pdb_00003s9y

3SEC | pdb_00003sec

4HIB | pdb_00004hib

4HKP | pdb_00004hkp