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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Pedelacq, J.D."

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Search Summary

This query matches 52 Structures.

Refinements

Structure Determination Methodology

experimental (52)

Scientific Name of Source Organism

	Mycobacterium tuberculosis (10)
	Mycobacteroides abscessus ATCC 19977 (8)
	Mycobacterium tuberculosis H37Rv (7)
	Mycobacterium tuberculosis variant bovis AF2122/97 (6)
	Staphylococcus phage PVL (6)
	Escherichia coli (5)
	Thermotoga maritima (3)
	Aequorea victoria (2)
	Homo sapiens (2)
	Thermoanaerobacterium saccharolyticum (2)

More...

Taxonomy

	Bacteria (40)
	Duplodnaviria (6)
	Eukaryota (5)
	Archaea (1)

Experimental Method

X-RAY DIFFRACTION (52)

Polymer Entity Type

Protein (52)

Refinement Resolution (Å)

	1.0 - 1.5 (9)
	1.5 - 2.0 (14)
	2.0 - 2.5 (14)
	2.5 - 3.0 (12)
	3.0 - 3.5 (3)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (7)
	2005 - 2009 (3)
	2010 - 2014 (9)
	2015 - 2019 (8)
	2020 - 2024 (21)

Enzyme Classification Name

	Transferases (23)
	Hydrolases (7)
	Oxidoreductases (1)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (45)
	Cyclic (9)
	Dihedral (5)

SCOP Classification

	Membrane and cell surface proteins and peptides (7)
	Alpha and beta proteins (a/b) (9)
	All beta proteins (4)
	Alpha and beta proteins (a+b) (3)
	Artifacts (3)
	Multi-domain proteins (alpha and beta) (2)

AllSelected

1 to 25 of 52 Structures

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1AVB \| pdb_00001avb	Download File View File

ARCELIN-1 FROM PHASEOLUS VULGARIS L

Mourey, L., Pedelacq, J.D., Fabre, C., Rouge, P., Samama, J.P.

(1998) J Biological Chem 273: 12914-12922

Released	1998-10-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Phaseolus vulgaris
Macromolecule	ARCELIN-1 (protein)
Unique Ligands	NAG, SO4
Unique branched monosaccharides	NAG

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1BT5 \| pdb_00001bt5	Download File View File

CRYSTAL STRUCTURE OF THE IMIPENEM INHIBITED TEM-1 BETA-LACTAMASE FROM ESCHERICHIA COLI

Maveyraud, L., Mourey, L., Pedelacq, J.D., Guillet, V., Kotra, L.K., Mobashery, S., Samama, J.P.

(1998) J Am Chem Soc 120: 9748-9752

Released	1999-09-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (BETA-LACTAMASE) (protein)
Unique Ligands	IM2, SO4

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1BUE \| pdb_00001bue	Download File View File

NMC-A CARBAPENEMASE FROM ENTEROBACTER CLOACAE

Swaren, P., Maveyraud, L., Cabantous, S., Pedelacq, J.D., Mourey, L., Frere, J.M., Samama, J.P.

(1998) J Biological Chem 273: 26714-26721

Released	1999-09-02
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Enterobacter cloacae
Macromolecule	PROTEIN (IMIPENEM-HYDROLYSING BETA-LACTAMASE) (protein)

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1J9J \| pdb_00001j9j	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF SURE PROTEIN FROM T.MARITIMA

Suh, S.W., Lee, J.Y., Kwak, J.E., Moon, J.

(2001) Nat Struct Biol 8: 789-794

Released	2001-09-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermotoga maritima
Macromolecule	STATIONARY PHASE SURVIVAL PROTEIN (protein)
Unique Ligands	MG, SO4

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1J9K \| pdb_00001j9k	Download File View File

CRYSTAL STRUCTURE OF SURE PROTEIN FROM T.MARITIMA IN COMPLEX WITH TUNGSTATE

Suh, S.W., Lee, J.Y., Kwak, J.E., Moon, J.

(2001) Nat Struct Biol 8: 789-794

Released	2001-09-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Thermotoga maritima
Macromolecule	STATIONARY PHASE SURVIVAL PROTEIN (protein)
Unique Ligands	CA, EPE, WO4

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1J9L \| pdb_00001j9l	Download File View File

CRYSTAL STRUCTURE OF SURE PROTEIN FROM T.MARITIMA IN COMPLEX WITH VANADATE

Suh, S.W., Lee, J.Y., Kwak, J.E., Moon, J.

(2001) Nat Struct Biol 8: 789-794

Released	2001-09-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermotoga maritima
Macromolecule	STATIONARY PHASE SURVIVAL PROTEIN (protein)
Unique Ligands	CA, EPE, VO4

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1PVL \| pdb_00001pvl	Download File View File

STRUCTURE OF THE PANTON-VALENTINE LEUCOCIDIN F COMPONENT FROM STAPHYLOCOCCUS AUREUS

Pedelacq, J.D., Mourey, L., Maveyraud, L., Prevost, G., Samama, J.P.

(1999) Structure 7: 277-287

Released	1999-06-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Staphylococcus aureus
Macromolecule	LEUCOCIDIN (protein)
Unique Ligands	MES

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1PX8 \| pdb_00001px8	Download File View File

Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase

Yang, J.K., Yoon, H.J., Ahn, H.J., Il Lee, B., Pedelacq, J.D., Liong, E.C., Berendzen, J., Laivenieks, M., Vieille, C., Zeikus, G.J., Vocadlo, D.J., Withers, S.G., Suh, S.W.

(2004) J Mol Biology 335: 155-165

Released	2003-12-23
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Thermoanaerobacterium saccharolyticum
Macromolecule	Beta-xylosidase (protein)
Unique Ligands	XYP

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1T5R \| pdb_00001t5r	Download File View File

STRUCTURE OF THE PANTON-VALENTINE LEUCOCIDIN S COMPONENT FROM STAPHYLOCOCCUS AUREUS

Guillet, V., Roblin, P., Keller, D., Prevost, G., Mourey, L.

(2004) J Biological Chem 279: 41028-41037

Released	2004-08-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Staphylococcus phage PVL
Macromolecule	LukS-PV (protein)

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1UHV \| pdb_00001uhv	Download File View File

Crystal structure of beta-D-xylosidase from Thermoanaerobacterium saccharolyticum, a family 39 glycoside hydrolase

Yang, J.K., Yoon, H.J., Ahn, H.J., Il Lee, B., Pedelacq, J.D., Liong, E.C., Berendzen, J., Laivenieks, M., Vieille, C., Zeikus, G.J., Vocadlo, D.J., Withers, S.G., Suh, S.W.

(2004) J Mol Biology 335: 155-165

Released	2003-12-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Thermoanaerobacterium saccharolyticum
Macromolecule	Beta-xylosidase (protein)
Unique Ligands	DFX

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1XQI \| pdb_00001xqi	Download File View File

Crystal Structure Analysis of an NDP kinase from Pyrobaculum aerophilum

Pedelacq, J.D., Waldo, G.S., Cabantous, S., Liong, E.C., Berendzen, J., Terwilliger, T.C.

(2005) Protein Sci 14: 2562-2573

Released	2005-09-20
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Pyrobaculum aerophilum
Macromolecule	Nucleoside diphosphate kinase (protein)
Unique Ligands	PGE, TRS

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1XVQ \| pdb_00001xvq	Download File View File

Crystal structure of thiol peroxidase from Mycobacterium tuberculosis

Rho, B.S., Pedelacq, J.D., Hung, L.W., Holton, J.M., Vigil, D., Kim, S.I., Park, M.S., Terwilliger, T.C., TB Structural Genomics Consortium (TBSGC)

(2006) J Mol Biology 361: 850-863

Released	2004-12-07
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	thiol peroxidase (protein)
Unique Ligands	NH4, YT3

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2B3P \| pdb_00002b3p	Download File View File

Crystal structure of a superfolder green fluorescent protein

Pedelacq, J.D., Cabantous, S., Tran, T.H., Terwilliger, T.C., Waldo, G.S.

(2006) Nat Biotechnol 24: 79-88

Released	2005-11-08
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Aequorea victoria
Macromolecule	green fluorescent protein (protein)
Unique Ligands	ACY, CD

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2B3Q \| pdb_00002b3q	Download File View File

Crystal structure of a well-folded variant of green fluorescent protein

Pedelacq, J.D., Cabantous, S., Tran, T.H., Terwilliger, T.C., Waldo, G.S.

(2006) Nat Biotechnol 24: 79-88

Released	2005-11-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Aequorea victoria
Macromolecule	green fluorescent protein (protein)
Unique Ligands	MG

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3TZW \| pdb_00003tzw	Download File View File

Crystal structure of a fragment containing the acyltransferase domain of Pks13 from Mycobacterium tuberculosis in the orthorhombic apoform at 2.6 A

Bergeret, F., Pedelacq, J.D., Mourey, L., Bon, C.

(2012) J Biological Chem 287: 33675-33690

Released	2012-08-29
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli Mycobacterium tuberculosis
Macromolecule	12-mer peptide (protein) Polyketide synthase PKS13 (protein)
Unique Ligands	EDO, SO4

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3TZX \| pdb_00003tzx	Download File View File

Crystal structure of a fragment containing the acyltransferase domain of Pks13 from Mycobacterium tuberculosis in tetragonal apo form at 2.3 A

Bergeret, F., Pedelacq, J.D., Mourey, L., Bon, C.

(2012) J Biological Chem 287: 33675-33690

Released	2012-08-29
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli Mycobacterium tuberculosis
Macromolecule	12-mer peptide (protein) Polyketide synthase PKS13 (protein)
Unique Ligands	GOL, SO4

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3TZY \| pdb_00003tzy	Download File View File

Crystal structure of a fragment containing the acyltransferase domain of Pks13 from Mycobacterium tuberculosis in the palmitoylated form at 2.2 A

Bergeret, F., Pedelacq, J.D., Mourey, L., Bon, C.

(2012) J Biological Chem 287: 33675-33690

Released	2012-08-29
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli Mycobacterium tuberculosis
Macromolecule	12-mer peptide (protein) Polyketide synthase PKS13 (protein)
Unique Ligands	GOL, PLM, SO4

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3TZZ \| pdb_00003tzz	Download File View File

Crystal structure of a fragment containing the acyltransferase domain of Pks13 from Mycobacterium tuberculosis in the carboxypalmitoylated form at 2.5 A

Bergeret, F., Pedelacq, J.D., Mourey, L., Bon, C.

(2012) J Biological Chem 287: 33675-33690

Released	2012-08-29
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Escherichia coli Mycobacterium tuberculosis
Macromolecule	12-mer peptide (protein) Polyketide synthase PKS13 (protein)
Unique Ligands	GOL, PG0, SO4, XPM

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4IYA \| pdb_00004iya	Download File View File

Structure of the Y250A mutant of the PANTON-VALENTINE LEUCOCIDIN S component from STAPHYLOCOCCUS AUREUS

Maveyraud, L., Guerin, F., Laventie, B.J., Prevost, G., Mourey, L.

(2014) PLoS One 9: e92094-e92094

Released	2014-01-29
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Staphylococcus phage PVL
Macromolecule	LukS-PV (protein)
Unique Ligands	EDO, FLC

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4IYC \| pdb_00004iyc	Download File View File

Structure of the T244A mutant of the PANTON-VALENTINE LEUCOCIDIN component from STAPHYLOCOCCUS AUREUS

Maveyraud, L., Guerin, F., Lavnetie, B.J., Prevost, G., Mourey, L.

(2014) PLoS One 9: e92094-e92094

Released	2014-01-29
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Staphylococcus phage PVL
Macromolecule	LukS-PV (protein)

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4IYT \| pdb_00004iyt	Download File View File

Structure Of The Y184A Mutant Of The PANTON-VALENTINE LEUCOCIDIN S Component From STAPHYLOCOCCUS AUREUS

Guerin, F., Laventie, B.J., Prevost, G., Mourey, L., Maveyraud, L.

(2014) PLoS One 9: e92094-e92094

Released	2014-01-29
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Staphylococcus phage PVL
Macromolecule	LukS-PV (protein)
Unique Ligands	MES

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4IZL \| pdb_00004izl	Download File View File

Structure Of The N248A Mutant of the PANTON-VALENTINE LEUCOCIDIN S Component from STAPHYLOCOCCUS AUREUS

Maveyraud, L., Laventie, B.J., Prevost, G., Mourey, L.

(2014) PLoS One 9: e92094-e92094

Released	2014-01-29
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Staphylococcus phage PVL
Macromolecule	LukS-PV (protein)

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4J0O \| pdb_00004j0o	Download File View File

Structure of the Y246A Mutant of the PANTON-VALENTINE LEUCOCIDIN S Component from STAPHYLOCOCCUS AUREUS

Maveyraud, L., Laventie, B.J., Prevost, G., Mourey, L.

(2014) PLoS One 9: e92094-e92094

Released	2014-01-29
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Staphylococcus phage PVL
Macromolecule	LukS-PV (protein)

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4OKI \| pdb_00004oki	Download File View File

X-ray structure of the nucleotide-binding subdomain of the enoylreductase domain of PpsC from Mycobacterium tuberculosis

Faille, A., Mourey, L., Pedelacq, J.D.

To be published

Released	2015-08-05
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Phthiocerol synthesis polyketide synthase type I PpsC (protein)
Unique Ligands	MPD, NA

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4OOC \| pdb_00004ooc	Download File View File

Dehydratase domain of the polyketide PpsC from Mycobacterium tuberculosis

Faille, A., Mourey, L., Pedelacq, J.D.

To be published

Released	2015-08-05
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Phthiocerol synthesis polyketide synthase type I PpsC (protein)
Unique Ligands	PO4

1 to 25 of 52 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AVB | pdb_00001avb

1BT5 | pdb_00001bt5

1BUE | pdb_00001bue

1J9J | pdb_00001j9j

1J9K | pdb_00001j9k

1J9L | pdb_00001j9l

1PVL | pdb_00001pvl

1PX8 | pdb_00001px8

1T5R | pdb_00001t5r

1UHV | pdb_00001uhv

1XQI | pdb_00001xqi

1XVQ | pdb_00001xvq

2B3P | pdb_00002b3p

2B3Q | pdb_00002b3q

3TZW | pdb_00003tzw

3TZX | pdb_00003tzx

3TZY | pdb_00003tzy

3TZZ | pdb_00003tzz

4IYA | pdb_00004iya

4IYC | pdb_00004iyc

4IYT | pdb_00004iyt

4IZL | pdb_00004izl

4J0O | pdb_00004j0o

4OKI | pdb_00004oki

4OOC | pdb_00004ooc