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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Peccati, F."

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Search Summary

This query matches 269 Structures.

Refinements

Structure Determination Methodology

experimental (269)

Scientific Name of Source Organism

	Gallus gallus (94)
	Bos taurus (76)
	Homo sapiens (25)
	Equus caballus (15)
	Dioscoreophyllum cumminsii (9)
	Trematomus bernacchii (8)
	synthetic construct (7)
	Lithobates pipiens (5)
	Trematomus newnesi (5)
	Pseudoalteromonas haloplanktis (4)

More...

Taxonomy

	Eukaryota (250)
	Bacteria (12)
	other sequences (7)
	unclassified sequences (2)

Experimental Method

X-RAY DIFFRACTION (269)

Polymer Entity Type

	Protein (262)
	DNA (14)
	NA-hybrid (1)

Refinement Resolution (Å)

	0.5 - 1.0 (5)
	1.0 - 1.5 (70)
	1.5 - 2.0 (112)
	2.0 - 2.5 (60)
	2.5 - 3.0 (15)
	3.0 - 3.5 (5)
	3.5 - 4.0 (2)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (10)
	2005 - 2009 (18)
	2010 - 2014 (50)
	2015 - 2019 (93)
	2020 - 2024 (93)
	2025 - 2029 (4)

Enzyme Classification Name

	Hydrolases (164)
	Lyases (74)
	Oxidoreductases (16)
	Transferases (3)

Symmetry Type

	Asymmetric (184)
	Cyclic (60)
	Octahedral (19)
	Dihedral (5)

SCOP Classification

	Alpha and beta proteins (a+b) (124)
	All alpha proteins (44)
	Artifacts (2)
	All beta proteins (3)

AllSelected

1 to 25 of 269 Structures

Page 1 of 11

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11BG \| pdb_000011bg	Download File View File

A POTENTIAL ALLOSTERIC SUBSITE GENERATED BY DOMAIN SWAPPING IN BOVINE SEMINAL RIBONUCLEASE

Vitagliano, L., Adinolfi, S., Sica, F., Merlino, A., Zagari, A., Mazzarella, L.

(1999) J Mol Biology 293: 569-577

Released	1999-11-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bos taurus
Macromolecule	PROTEIN (BOVINE SEMINAL RIBONUCLEASE) (protein)
Unique Ligands	SO4, U2G

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1EOS \| pdb_00001eos	Download File View File

CRYSTAL STRUCTURE OF RIBONUCLEASE A COMPLEXED WITH URIDYLYL(2',5')GUANOSINE (PRODUCTIVE BINDING)

Vitagliano, L., Merlino, A., Zagari, A., Mazzarella, L.

(2000) Protein Sci 9: 1217-1225

Released	2000-08-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus
Macromolecule	RIBONUCLEASE PANCREATIC (protein)
Unique Ligands	U2G

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1EOW \| pdb_00001eow	Download File View File

CRYSTAL STRUCTURE OF RIBONUCLEASE A COMPLEXED WITH URIDYLYL(2',5')GUANOSINE (NON-PRODUCTIVE BINDING)

Vitagliano, L., Merlino, A., Zagari, A., Mazzarella, L.

(2000) Protein Sci 9: 1217-1225

Released	2000-11-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus
Macromolecule	RIBONUCLEASE PANCREATIC (protein)
Unique Ligands	SO4, U2G

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1JVT \| pdb_00001jvt	Download File View File

CRYSTAL STRUCTURE OF RIBONUCLEASE A (LIGAND-FREE FORM)

Vitagliano, L., Merlino, A., Zagari, A., Mazzarella, L.

(2002) Proteins 46: 97-104

Released	2002-06-05
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Bos taurus
Macromolecule	RIBONUCLEASE A (protein)

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1JVU \| pdb_00001jvu	Download File View File

CRYSTAL STRUCTURE OF RIBONUCLEASE A (COMPLEXED FORM)

Vitagliano, L., Merlino, A., Zagari, A., Mazzarella, L.

(2002) Proteins 46: 97-104

Released	2002-06-05
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Bos taurus
Macromolecule	RIBONUCLEASE A (protein)
Unique Ligands	C2P

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1JVV \| pdb_00001jvv	Download File View File

CRYSTAL STRUCTURE OF RIBONUCLEASE A (RETRO-SOAKED FORM)

Vitagliano, L., Merlino, A., Zagari, A., Mazzarella, L.

(2002) Proteins 46: 97-104

Released	2002-06-05
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bos taurus
Macromolecule	RIBONUCLEASE A (protein)

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1R5C \| pdb_00001r5c	Download File View File

X-ray structure of the complex of Bovine seminal ribonuclease swapping dimer with d(CpA)

Merlino, A., Vitagliano, L., Sica, F., Zagari, A., Mazzarella, L.

(2004) Biopolymers 73: 689-695

Released	2004-04-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bos taurus
Macromolecule	Ribonuclease, seminal (protein)
Unique Ligands	CPA

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1R5D \| pdb_00001r5d	Download File View File

X-ray structure of bovine seminal ribonuclease swapping dimer from a new crystal form

Merlino, A., Vitagliano, L., Sica, F., Zagari, A., Mazzarella, L.

(2004) Biopolymers 73: 689-695

Released	2004-04-13
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bos taurus
Macromolecule	Ribonuclease, seminal (protein)

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1TQ9 \| pdb_00001tq9	Download File View File

Non-covalent swapped dimer of Bovine Seminal Ribonuclease in complex with 2'-DEOXYCYTIDINE-2'-DEOXYADENOSINE-3',5'-MONOPHOSPHATE

Sica, F., Di Fiore, A., Merlino, A., Mazzarella, L.

(2004) J Biological Chem 279: 36753-36760

Released	2004-09-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus
Macromolecule	Ribonuclease, seminal (protein)
Unique Ligands	CPA

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1Y92 \| pdb_00001y92	Download File View File

Crystal structure of the P19A/N67D Variant Of Bovine seminal Ribonuclease

Picone, D., Di Fiore, A., Ercole, C., Franzese, M., Sica, F., Tomaselli, S., Mazzarella, L.

(2005) J Biological Chem 280: 13771-13778

Released	2004-12-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bos taurus
Macromolecule	Seminal ribonuclease (protein)

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1Y94 \| pdb_00001y94	Download File View File

Crystal structure of the G16S/N17T/P19A/S20A/N67D Variant Of Bovine seminal Ribonuclease

Picone, D., Di Fiore, A., Ercole, C., Franzese, M., Sica, F., Tomaselli, S., Mazzarella, L.

(2005) J Biological Chem 280: 13771-13778

Released	2004-12-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bos taurus
Macromolecule	Seminal ribonuclease (protein)

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1YV4 \| pdb_00001yv4	Download File View File

X-ray structure of M23L onconase at 100K

Merlino, A., Mazzarella, L., Carannante, A., Di Fiore, A., Di Donato, A., Notomista, E., Sica, F.

(2005) J Biological Chem 280: 17953-17960

Released	2005-03-01
Method	X-RAY DIFFRACTION 1.51 Å
Organisms	Lithobates pipiens
Macromolecule	P-30 protein (protein)
Unique Ligands	SO4

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1YV6 \| pdb_00001yv6	Download File View File

X-ray structure of M23L onconase at 298K

Merlino, A., Mazzarella, L., Carannante, A., Di Fiore, A., Di Donato, A., Notomista, E., Sica, F.

(2005) J Biological Chem 280: 17953-17960

Released	2005-03-01
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Lithobates pipiens
Macromolecule	P-30 protein (protein)
Unique Ligands	SO4

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1YV7 \| pdb_00001yv7	Download File View File

X-ray structure of (C87S,des103-104) onconase

Merlino, A., Mazzarella, L., Carannante, A., Di Fiore, A., Di Donato, A., Notomista, E., Sica, F.

(2005) J Biological Chem 280: 17953-17960

Released	2005-03-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Lithobates pipiens
Macromolecule	P-30 protein (protein)
Unique Ligands	SO4

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2AA1 \| pdb_00002aa1	Download File View File

Crystal structure of the cathodic hemoglobin isolated from the Antarctic fish Trematomus Newnesi

Mazzarella, L., Bonomi, G., Lubrano, M.C., Merlino, A., Riccio, A., Vergara, A., Vitagliano, L., Verde, C., Di Prisco, G.

(2006) Proteins 62: 316-321

Released	2005-08-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Trematomus newnesi
Macromolecule	Hemoglobin alpha-1 chain (protein) Hemoglobin beta-C chain (protein)
Unique Ligands	HEM

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2H8D \| pdb_00002h8d	Download File View File

Crystal structure of deoxy hemoglobin from Trematomus bernacchii at pH 8.4

Mazzarella, L., Vergara, A., Vitagliano, L., Merlino, A., Bonomi, G., Scala, S., Verde, C., di Prisco, G.

(2006) Proteins 65: 490-498

Released	2006-08-29
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Trematomus bernacchii
Macromolecule	Hemoglobin alpha subunit (protein) Hemoglobin beta subunit (protein)
Unique Ligands	HEM, K

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2H8F \| pdb_00002h8f	Download File View File

Crystal structure of deoxy hemoglobin from Trematomus bernacchii at pH 6.2

Mazzarella, L., Vergara, A., Vitagliano, L., Merlino, A., Bonomi, G., Scala, S., Verde, C., di Prisco, G.

(2006) Proteins 65: 490-498

Released	2006-08-29
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Trematomus bernacchii
Macromolecule	Hemoglobin alpha subunit (protein) Hemoglobin beta subunit (protein)
Unique Ligands	HEM

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2PEG \| pdb_00002peg	Download File View File

Crystal structure of Trematomus bernacchii hemoglobin in a partial hemichrome state

Vergara, A., Franzese, M., Merlino, A., Vitagliano, L., Mazzarella, L.

(2007) Biophys J 93: 2822-2829

Released	2007-07-24
Method	X-RAY DIFFRACTION 1.48 Å
Organisms	Trematomus bernacchii
Macromolecule	Hemoglobin subunit alpha (protein) Hemoglobin subunit beta (protein)
Unique Ligands	HEM

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3BCM \| pdb_00003bcm	Download File View File

Crystal Structure of The Unswapped Form of P19A/L28Q/N67D BS-RNase

Merlino, A., Ercole, C., Picone, D., Pizzo, E., Mazzarella, L., Sica, F.

(2008) J Mol Biology 376: 427-437

Released	2008-02-12
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Bos taurus
Macromolecule	Seminal ribonuclease (protein)
Unique Ligands	PO4

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3BCO \| pdb_00003bco	Download File View File

Crystal Structure of The Swapped FOrm of P19A/L28Q/N67D BS-RNase

Merlino, A., Ercole, C., Picone, D., Pizzo, E., Mazzarella, L., Sica, F.

(2008) J Mol Biology 376: 427-437

Released	2008-02-12
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Bos taurus
Macromolecule	Seminal ribonuclease (protein)

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3BCP \| pdb_00003bcp	Download File View File

Crystal Structure of The Swapped non covalent form of P19A/L28Q/N67D BS-RNase

Merlino, A., Ercole, C., Picone, D., Pizzo, E., Mazzarella, L., Sica, F.

(2008) J Mol Biology 376: 427-437

Released	2008-02-12
Method	X-RAY DIFFRACTION 2.57 Å
Organisms	Bos taurus
Macromolecule	Seminal ribonuclease (protein)

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3D1K \| pdb_00003d1k	Download File View File

R/T intermediate quaternary structure of an antarctic fish hemoglobin in an alpha(CO)-beta(pentacoordinate) state

Vitagliano, L., Vergara, A., Bonomi, G., Merlino, A., Mazzarella, L.

(2008) J Am Chem Soc 130: 10527-10535

Released	2008-08-05
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Trematomus newnesi
Macromolecule	Hemoglobin subunit alpha-1 (protein) Hemoglobin subunit beta-1/2 (protein)
Unique Ligands	ACE, CMO, HEM