RCSB PDB: Search

2FGU \| pdb_00002fgu	Download File View File

X-ray crystal structure of HIV-1 Protease T80S variant in complex with the inhibitor saquinavir used to explore the role of invariant Thr80 in HIV-1 protease structure, function, and viral infectivity.

Foulkes, J.E., Prabu-Jeyabalan, M., Cooper, D., Schiffer, C.A.

(2006) J Virol 80: 6906-6916

Released	2006-11-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease (protein)
Unique Ligands	ASN, DIQ, HPH, NTB, PO4, QNC

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2FGV \| pdb_00002fgv	Download File View File

X-ray crystal structure of HIV-1 Protease T80N variant in complex with the inhibitor saquinavir used to explore the role of invariant Thr80 in HIV-1 protease structure, function, and viral infectivity.

Foulkes, J.E., Prabu-Jeyabalan, M., Cooper, D., Schiffer, C.A.

(2006) J Virol 80: 6906-6916

Released	2006-11-07
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease (protein)
Unique Ligands	ASN, DIQ, HPH, NTB, PO4, QNC

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6CBU \| pdb_00006cbu	Download File View File

Crystal structure of C4S3: A computationally designed immunogen to target Carbohydrate-Occluded Epitopes on the HIV envelope

Zhu, C., Ke, H.M., Swanstrom, R., Dokholyan, N.V.

(2019) Nat Commun 10: 948-948

Released	2019-02-06
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Homo sapiens
Macromolecule	Acylphosphatase-1 (protein)
Unique Ligands	SO4

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6CFE \| pdb_00006cfe	Download File View File

Crystal structure of C2S5: A computationally designed immunogen to target Carbohydrate-Occluded Epitopes on the HIV envelope

Zhu, C., Ke, H.M., Swanstrom, R., Dokholyan, N.V.

(2019) Nat Commun 10: 948-948

Released	2019-02-06
Method	X-RAY DIFFRACTION 1.994 Å
Organisms	Homo sapiens
Macromolecule	Mutant of Apolipoprotein E3 (APO-E3) (protein)

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6OPS \| pdb_00006ops	Download File View File

HIV-1 Protease NL4-3 WT in complex with darunavir

Lockbaum, G.J., Henes, M., Kosovrasti, K., Leidner, F., Nachum, G.S., Nalivaika, E.A., Bolon, D.N.A., KurtYilmaz, N., Schiffer, C.A.

(2019) ACS Chem Biol 14: 2441-2452

Released	2019-09-04
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease NL4-3 (protein)
Unique Ligands	017

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6OPT \| pdb_00006opt	Download File View File

HIV-1 Protease NL4-3 V82F, I84V Mutant in complex with darunavir

Lockbaum, G.J., Henes, M., Kosovrasti, K., Leidner, F., Nachum, G.S., Nalivaika, E.A., Bolon, D.N.A., KurtYilmaz, N., Schiffer, C.A.

(2019) ACS Chem Biol 14: 2441-2452

Released	2019-09-04
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease NL4-3 (protein)
Unique Ligands	017, SO4

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6OPU \| pdb_00006opu	Download File View File

HIV-1 Protease NL4-3 K45I, M46I, V82F, I84V Mutant in complex with darunavir

Lockbaum, G.J., Henes, M., Kosovrasti, K., Leidner, F., Nachum, G.S., Nalivaika, E.A., Bolon, D.N.A., KurtYilmaz, N., Schiffer, C.A.

(2019) ACS Chem Biol 14: 2441-2452

Released	2019-09-04
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease NL4-3 (protein)
Unique Ligands	017

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6OPV \| pdb_00006opv	Download File View File

HIV-1 Protease NL4-3 I13V, G16E, V32I, L33F, K45I, M46I, V82F, I84V Mutant in complex with darunavir

Lockbaum, G.J., Henes, M., Kosovrasti, K., Leidner, F., Nachum, G.S., Nalivaika, E.A., Bolon, D.N.A., KurtYilmaz, N., Schiffer, C.A.

(2019) ACS Chem Biol 14: 2441-2452

Released	2019-09-04
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease NL4-3 (protein)
Unique Ligands	017

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6OPW \| pdb_00006opw	Download File View File

HIV-1 Protease NL4-3 I13V, G16E, V32I, L33F, K45I, M46I, A71V, V82F, I84V Mutant in complex with darunavir

Lockbaum, G.J., Henes, M., Kosovrasti, K., Leidner, F., Nachum, G.S., Nalivaika, E.A., Bolon, D.N.A., KurtYilmaz, N., Schiffer, C.A.

(2019) ACS Chem Biol 14: 2441-2452

Released	2019-09-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease NL4-3 (protein)
Unique Ligands	017, SO4

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6OPX \| pdb_00006opx	Download File View File

HIV-1 Protease NL4-3 I13V, G16E, V32I, L33F, K45I, M46I, L76V, V82F, I84V Mutant in complex with darunavir

Lockbaum, G.J., Henes, M., Kosovrasti, K., Leidner, F., Nachum, G.S., Nalivaika, E.A., Bolon, D.N.A., KurtYilmaz, N., Schiffer, C.A.

(2019) ACS Chem Biol 14: 2441-2452

Released	2019-09-04
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease NL4-3 (protein)
Unique Ligands	017

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6OPY \| pdb_00006opy	Download File View File

HIV-1 Protease NL4-3 I13V, G16E, V32I, L33F, K45I, M46I, A71V, L76V, V82F, I84V Mutant in complex with darunavir

Lockbaum, G.J., Henes, M., Kosovrasti, K., Leidner, F., Nachum, G.S., Nalivaika, E.A., Bolon, D.N.A., KurtYilmaz, N., Schiffer, C.A.

(2019) ACS Chem Biol 14: 2441-2452

Released	2019-09-04
Method	X-RAY DIFFRACTION 2.13 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease NL4-3 (protein)
Unique Ligands	017

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6OPZ \| pdb_00006opz	Download File View File

HIV-1 Protease NL4-3 I13V, G16E, V32I, L33F, K45I, M46I, I54L, A71V, L76V, V82F, I84V Mutant in complex with darunavir

Lockbaum, G.J., Henes, M., Kosovrasti, K., Leidner, F., Nachum, G.S., Nalivaika, E.A., Bolon, D.N.A., KurtYilmaz, N., Schiffer, C.A.

(2019) ACS Chem Biol 14: 2441-2452

Released	2019-09-04
Method	X-RAY DIFFRACTION 2.201 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease NL4-3 (protein)
Unique Ligands	017

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6OXO \| pdb_00006oxo	Download File View File

HIV-1 Protease NL4-3 WT in Complex with LR2-91

Lockbaum, G.J., Rusere, L.N., Lee, S.K., Henes, M., Kosovrasti, K., Spielvogel, E., Nalivaika, E.A., Swanstrom, R., KurtYilmaz, N., Schiffer, C.A., Ali, A.

(2019) J Med Chem 62: 8062-8079

Released	2019-08-21
Method	X-RAY DIFFRACTION 2.003 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease NL4-3 (protein)
Unique Ligands	NJM, SO4

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6OXP \| pdb_00006oxp	Download File View File

HIV-1 Protease NL4-3 WT in Complex with UMass3

Lockbaum, G.J., Rusere, L.N., Lee, S.K., Henes, M., Kosovrasti, K., Spielvogel, E., Nalivaika, E.A., Swanstrom, R., KurtYilmaz, N., Schiffer, C.A., Ali, A.

(2019) J Med Chem 62: 8062-8079

Released	2019-08-21
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease NL4-3 (protein)
Unique Ligands	K2A, SO4

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6OXQ \| pdb_00006oxq	Download File View File

HIV-1 Protease NL4-3 WT in Complex with UMass8

Lockbaum, G.J., Rusere, L.N., Lee, S.K., Henes, M., Kosovrasti, K., Spielvogel, E., Nalivaika, E.A., Swanstrom, R., KurtYilmaz, N., Schiffer, C.A., Ali, A.

(2019) J Med Chem 62: 8062-8079

Released	2019-08-21
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease NL4-3 (protein)
Unique Ligands	F53, SO4

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6OXR \| pdb_00006oxr	Download File View File

HIV-1 Protease NL4-3 WT in Complex with LR-82

Lockbaum, G.J., Rusere, L.N., Lee, S.K., Henes, M., Kosovrasti, K., Spielvogel, E., Nalivaika, E.A., Swanstrom, R., KurtYilmaz, N., Schiffer, C.A., Ali, A.

(2019) J Med Chem 62: 8062-8079

Released	2019-08-21
Method	X-RAY DIFFRACTION 2.035 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease NL4-3 (protein)
Unique Ligands	NJA

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6OXS \| pdb_00006oxs	Download File View File

HIV-1 Protease NL4-3 WT in Complex with LR-76

Lockbaum, G.J., Rusere, L.N., Lee, S.K., Henes, M., Kosovrasti, K., Spielvogel, E., Nalivaika, E.A., Swanstrom, R., KurtYilmaz, N., Schiffer, C.A., Ali, A.

(2019) J Med Chem 62: 8062-8079

Released	2019-08-21
Method	X-RAY DIFFRACTION 1.989 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease NL4-3 (protein)
Unique Ligands	NJ4

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6OXT \| pdb_00006oxt	Download File View File

HIV-1 Protease NL4-3 WT in Complex with LR-84

Lockbaum, G.J., Rusere, L.N., Lee, S.K., Henes, M., Kosovrasti, K., Spielvogel, E., Nalivaika, E.A., Swanstrom, R., KurtYilmaz, N., Schiffer, C.A., Ali, A.

(2019) J Med Chem 62: 8062-8079

Released	2019-08-21
Method	X-RAY DIFFRACTION 1.861 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease NL4-3 (protein)
Unique Ligands	NEJ, SO4

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6OXU \| pdb_00006oxu	Download File View File

HIV-1 Protease NL4-3 WT in Complex with LR-99

Lockbaum, G.J., Rusere, L.N., Lee, S.K., Henes, M., Kosovrasti, K., Spielvogel, E., Nalivaika, E.A., Swanstrom, R., KurtYilmaz, N., Schiffer, C.A., Ali, A.

(2019) J Med Chem 62: 8062-8079

Released	2019-08-21
Method	X-RAY DIFFRACTION 1.861 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease NL4-3 (protein)
Unique Ligands	NE7, SO4

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6OXV \| pdb_00006oxv	Download File View File

HIV-1 Protease NL4-3 WT in Complex with LR-85

Lockbaum, G.J., Rusere, L.N., Lee, S.K., Henes, M., Kosovrasti, K., Spielvogel, E., Nalivaika, E.A., Swanstrom, R., KurtYilmaz, N., Schiffer, C.A., Ali, A.

(2019) J Med Chem 62: 8062-8079

Released	2019-08-21
Method	X-RAY DIFFRACTION 1.991 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease NL4-3 (protein)
Unique Ligands	NF4

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6OXW \| pdb_00006oxw	Download File View File

HIV-1 Protease NL4-3 WT in Complex with LR-100

Lockbaum, G.J., Rusere, L.N., Lee, S.K., Henes, M., Kosovrasti, K., Spielvogel, E., Nalivaika, E.A., Swanstrom, R., KurtYilmaz, N., Schiffer, C.A., Ali, A.

(2019) J Med Chem 62: 8062-8079

Released	2019-08-21
Method	X-RAY DIFFRACTION 1.982 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease NL4-3 (protein)
Unique Ligands	NFJ

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6OXX \| pdb_00006oxx	Download File View File

HIV-1 Protease NL4-3 WT in Complex with LR2-18

Lockbaum, G.J., Rusere, L.N., Lee, S.K., Henes, M., Kosovrasti, K., Spielvogel, E., Nalivaika, E.A., Swanstrom, R., KurtYilmaz, N., Schiffer, C.A., Ali, A.

(2019) J Med Chem 62: 8062-8079

Released	2019-08-21
Method	X-RAY DIFFRACTION 1.962 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease NL4-3 (protein)
Unique Ligands	NF7

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6OXY \| pdb_00006oxy	Download File View File

HIV-1 Protease NL4-3 WT in Complex with LR2-19

Lockbaum, G.J., Rusere, L.N., Lee, S.K., Henes, M., Kosovrasti, K., Spielvogel, E., Nalivaika, E.A., Swanstrom, R., KurtYilmaz, N., Schiffer, C.A., Ali, A.

(2019) J Med Chem 62: 8062-8079

Released	2019-08-21
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease NL4-3 (protein)
Unique Ligands	NG4, SO4

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6OXZ \| pdb_00006oxz	Download File View File

HIV-1 Protease NL4-3 WT in Complex with LR2-20

Lockbaum, G.J., Rusere, L.N., Lee, S.K., Henes, M., Kosovrasti, K., Spielvogel, E., Nalivaika, E.A., Swanstrom, R., KurtYilmaz, N., Schiffer, C.A., Ali, A.

(2019) J Med Chem 62: 8062-8079

Released	2019-08-21
Method	X-RAY DIFFRACTION 1.961 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease NL4-3 (protein)
Unique Ligands	NJG, SO4

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6OY0 \| pdb_00006oy0	Download File View File

HIV-1 Protease NL4-3 WT in Complex with LR2-21

Lockbaum, G.J., Rusere, L.N., Lee, S.K., Henes, M., Kosovrasti, K., Spielvogel, E., Nalivaika, E.A., Swanstrom, R., KurtYilmaz, N., Schiffer, C.A., Ali, A.

(2019) J Med Chem 62: 8062-8079

Released	2019-08-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease NL4-3 (protein)
Unique Ligands	NJ7, SO4

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2FGU | pdb_00002fgu

2FGV | pdb_00002fgv

6CBU | pdb_00006cbu

6CFE | pdb_00006cfe

6OPS | pdb_00006ops

6OPT | pdb_00006opt

6OPU | pdb_00006opu

6OPV | pdb_00006opv

6OPW | pdb_00006opw

6OPX | pdb_00006opx

6OPY | pdb_00006opy

6OPZ | pdb_00006opz

6OXO | pdb_00006oxo

6OXP | pdb_00006oxp

6OXQ | pdb_00006oxq

6OXR | pdb_00006oxr

6OXS | pdb_00006oxs

6OXT | pdb_00006oxt

6OXU | pdb_00006oxu

6OXV | pdb_00006oxv

6OXW | pdb_00006oxw

6OXX | pdb_00006oxx

6OXY | pdb_00006oxy

6OXZ | pdb_00006oxz

6OY0 | pdb_00006oy0