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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Offen, W.A."

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Search Summary

This query matches 116 Structures.

Refinements

Structure Determination Methodology

experimental (116)

Scientific Name of Source Organism

	Escherichia coli K-12 (25)
	Homo sapiens (22)
	Escherichia coli (17)
	synthetic construct (10)
	Caulobacter vibrioides (9)
	Pseudomonas aeruginosa (7)
	Haemophilus influenzae (5)
	Mus musculus (5)
	Poliovirus type 3 (strains P3/LEON/37 AND P3/LEON 12A[1]B) (5)
	Agrobacterium fabrum str. C58 (3)

More...

Taxonomy

	Bacteria (74)
	Eukaryota (29)
	Riboviria (12)
	other sequences (10)

Experimental Method

X-RAY DIFFRACTION (116)

Polymer Entity Type

	Protein (116)
	DNA (5)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (13)
	1.5 - 2.0 (24)
	2.0 - 2.5 (27)
	2.5 - 3.0 (36)
	3.0 - 3.5 (11)
	3.5 - 4.0 (3)
	4.0 - 4.5 (1)
	> 4.5 (1)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (10)
	2000 - 2004 (13)
	2005 - 2009 (31)
	2010 - 2014 (22)
	2015 - 2019 (21)
	2020 - 2024 (18)

Enzyme Classification Name

	Hydrolases (30)
	Transferases (7)
	Oxidoreductases (6)

Symmetry Type

	Asymmetric (50)
	Cyclic (52)
	Icosahedral (10)
	Tetrahedral (8)
	Dihedral (7)
	Helical (1)
	Octahedral (1)

SCOP Classification

	All beta proteins (32)
	All alpha proteins (10)
	Alpha and beta proteins (a+b) (18)
	Alpha and beta proteins (a/b) (6)
	Small proteins (2)
	Artifacts (4)
	Membrane and cell surface proteins and peptides (5)
	Designed proteins (2)

AllSelected

1 to 25 of 116 Structures

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1DPS \| pdb_00001dps	Download File View File

THE CRYSTAL STRUCTURE OF DPS, A FERRITIN HOMOLOG THAT BINDS AND PROTECTS DNA

Grant, R.A., Filman, D.J., Finkel, S.E., Kolter, R., Hogle, J.M.

(1998) Nat Struct Biol 5: 294-303

Released	1998-09-16
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli
Macromolecule	DPS (protein)
Unique Ligands	NA

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1DU0 \| pdb_00001du0	Download File View File

ENGRAILED HOMEODOMAIN Q50A VARIANT DNA COMPLEX

Grant, R.A., Rould, M.A., Klemm, J.D., Pabo, C.O.

(2000) Biochemistry 39: 8187-8192

Released	2000-07-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Drosophila melanogaster
Macromolecule	ENGRAILED HOMEODOMAIN (protein) DNA (5'-D(APTPTPAPGPGPTPAPAPTPTPAPCPAPTPGPGPCPAPAPA)-3') (nucleic acid) DNA (5'-D(TPTPTPTPGPCPCPAPTPGPTPAPAPTPTPAPCPCPTPAPA)-3') (nucleic acid)

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1EAH \| pdb_00001eah	Download File View File

PV2L COMPLEXED WITH ANTIVIRAL AGENT SCH48973

Lentz, K., Arnold, E.

(1997) Structure 5: 961-978

Released	1998-09-16
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Poliovirus 2
Macromolecule	POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4 (protein)
Unique Ligands	MYR, SC4

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1F2I \| pdb_00001f2i	Download File View File

COCRYSTAL STRUCTURE OF SELECTED ZINC FINGER DIMER BOUND TO DNA

Wang, B.S., Grant, R.A., Pabo, C.O.

(2001) Nat Struct Biol 8: 589-593

Released	2001-09-14
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Mus musculus
Macromolecule	FUSION OF N-TERMINAL 17-MER PEPTIDE EXTENSION TO ZIF12 (protein) 5'-D(APTPGPGPGPCPGPCPGPCPCPCPAPT)-3' (nucleic acid)
Unique Ligands	ZN

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1G2D \| pdb_00001g2d	Download File View File

STRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (CLONE #2)

Wolfe, S.A., Grant, R.A., Elrod-Erickson, M., Pabo, C.O.

(2001) Structure 9: 717-723

Released	2001-09-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mus musculus
Macromolecule	TATA BOX ZINC FINGER PROTEIN (protein) 5'-D(GPAPCPGPCPTPAPTPAPAPAPAPGPGPAPG)-3' (nucleic acid) 5'-D(TPCPCPTPTPTPTPAPTPAPGPCPGPTPCPC)-3' (nucleic acid)
Unique Ligands	ZN

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1G2F \| pdb_00001g2f	Download File View File

STRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (TATAZF;CLONE #6)

Wolfe, S.A., Grant, R.A., Elrod-Erickson, M., Pabo, C.O.

(2001) Structure 9: 717-723

Released	2001-09-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	TATA BOX ZINC FINGER PROTEIN (protein) 5'-D(GPAPCPGPCPTPAPTPAPAPAPAPGPGPAPG)-3' (nucleic acid) 5'-D(TPCPCPTPTPTPTPAPTPAPGPCPGPTPCPC)-3' (nucleic acid)
Unique Ligands	ZN

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1JI4 \| pdb_00001ji4	Download File View File

NAP protein from helicobacter pylori

Zanotti, G., Papinutto, E., Dundon, W.G., Battistutta, R., Seveso, M., Del Giudice, G., Rappuoli, R., Montecucco, C.

(2002) J Mol Biology 323: 125-130

Released	2002-10-09
Method	X-RAY DIFFRACTION 2.52 Å
Organisms	Helicobacter pylori
Macromolecule	NEUTROPHIL-ACTIVATING PROTEIN A (protein)
Unique Ligands	FE, MPD, UNX

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1JI5 \| pdb_00001ji5	Download File View File

Dlp-1 from bacillus anthracis

Papinutto, E., Dundon, W.G., Pitulis, N., Battistutta, R., Montecucco, C., Zanotti, G.

(2002) J Biological Chem 277: 15093-15098

Released	2002-06-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bacillus anthracis
Macromolecule	Dlp-1 (protein)
Unique Ligands	FE, MPD

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1JIG \| pdb_00001jig	Download File View File

Dlp-2 from Bacillus anthracis

Papinutto, E., Dundon, W.G., Pitulis, N., Battistutta, R., Montecucco, C., Zanotti, G.

(2002) J Biological Chem 277: 15093-15098

Released	2002-06-19
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Bacillus anthracis
Macromolecule	Dlp-2 (protein)
Unique Ligands	FE

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1LLM \| pdb_00001llm	Download File View File

Crystal Structure of a Zif23-GCN4 Chimera Bound to DNA

Wolfe, S.A., Grant, R.A., Pabo, C.O.

(2003) Biochemistry 42: 13401-13409

Released	2003-09-30
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Mus musculus Saccharomyces cerevisiae
Macromolecule	chimera of Zif23-GCN4 (protein) 5'-D(TPCPCPCPAPCPGPCPGPTPGPGP*G)-3' (nucleic acid)
Unique Ligands	ZN

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1O9R \| pdb_00001o9r	Download File View File

The X-ray crystal structure of Agrobacterium tumefaciens Dps, a member of the family that protect DNA without binding

Ilari, A., Ceci, P., Chiancone, E.

(2003) J Biological Chem 278: 20319

Released	2003-05-29
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Agrobacterium tumefaciens
Macromolecule	AGROBACTERIUM TUMEFACIENS DPS (protein)
Unique Ligands	EDO, FE, TRS

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1OU8 \| pdb_00001ou8	Download File View File

structure of an AAA+ protease delivery protein in complex with a peptide degradation tag

Levchenko, I., Grant, R.A., Wah, D.A., Sauer, R.T., Baker, T.A.

(2003) Mol Cell 12: 365-372

Released	2003-09-23
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Haemophilus influenzae synthetic construct
Macromolecule	Stringent starvation protein B homolog (protein) synthetic ssrA peptide (protein)
Unique Ligands	MG

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1OU9 \| pdb_00001ou9	Download File View File

Structure of SspB, a AAA+ protease delivery protein

Levchenko, I., Grant, R.A., Wah, D.A., Sauer, R.T., Baker, T.A.

(2003) Mol Cell 12: 365-372

Released	2003-09-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Haemophilus influenzae
Macromolecule	Stringent starvation protein B homolog (protein)
Unique Ligands	CA

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1OUL \| pdb_00001oul	Download File View File

Structure of the AAA+ protease delivery protein SspB

Levchenko, I., Grant, R.A., Wah, D.A., Sauer, R.T., Baker, T.A.

(2003) Mol Cell 12: 365-372

Released	2003-09-23
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Haemophilus influenzae
Macromolecule	Stringent starvation protein B homolog (protein)

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1PIV \| pdb_00001piv	Download File View File

BINDING OF THE ANTIVIRAL DRUG WIN51711 TO THE SABIN STRAIN OF TYPE 3 POLIOVIRUS: STRUCTURAL COMPARISON WITH DRUG BINDING IN RHINOVIRUS 14

Hiremath, C.N., Grant, R.A., Filman, D.J., Hogle, J.M.

(1995) Acta Crystallogr D Biol Crystallogr 51: 473-489

Released	1995-06-03
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Poliovirus type 3 (strains P3/LEON/37 AND P3/LEON 12A[1]B)
Macromolecule	POLIOVIRUS TYPE 3 (SUBUNIT VP1) (protein) POLIOVIRUS TYPE 3 (SUBUNIT VP2) (protein) POLIOVIRUS TYPE 3 (SUBUNIT VP3) (protein) POLIOVIRUS TYPE 3 (SUBUNIT VP4) (protein)
Unique Ligands	MYR, W71

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1PO1 \| pdb_00001po1	Download File View File

POLIOVIRUS (TYPE 1, MAHONEY) IN COMPLEX WITH R80633, AN INHIBITOR OF VIRAL REPLICATION

Hiremath, C.N., Filman, D.J., Grant, R.A., Hogle, J.M.

(1997) Acta Crystallogr D Biol Crystallogr 53: 558-570

Released	1997-12-03
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Human poliovirus 1 Mahoney
Macromolecule	POLIOVIRUS TYPE 1 MAHONEY (protein)
Unique Ligands	J80, MYR

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1PO2 \| pdb_00001po2	Download File View File

POLIOVIRUS (TYPE 1, MAHONEY) IN COMPLEX WITH R77975, AN INHIBITOR OF VIRAL REPLICATION

Hiremath, C.N., Filman, D.J., Grant, R.A., Hogle, J.M.

(1997) Acta Crystallogr D Biol Crystallogr 53: 558-570

Released	1997-12-03
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Human poliovirus 1 Mahoney
Macromolecule	POLIOVIRUS TYPE 1 MAHONEY (protein)
Unique Ligands	J77, MYR

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1TME \| pdb_00001tme	Download File View File

THREE-DIMENSIONAL STRUCTURE OF THEILER VIRUS

Grant, R.A., Filman, D.J., Hogle, J.M.

(1992) Proc Natl Acad Sci U S A 89: 2061-2065

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Theiler's encephalomyelitis virus (STRAIN DA)
Macromolecule	THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP1) (protein) THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP2) (protein) THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP3) (protein) THEILER'S MURINE ENCEPHALOMYELITIS VIRUS (SUBUNIT VP4) (protein)

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1TWB \| pdb_00001twb	Download File View File

SspB disulfide crosslinked to an ssrA degradation tag

Bolon, D.N., Grant, R.A., Baker, T.A., Sauer, R.T.

(2004) Mol Cell 16: 343-350

Released	2004-11-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Haemophilus influenzae
Macromolecule	Stringent starvation protein B homolog (protein) ssrA peptide (protein)

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1U9P \| pdb_00001u9p	Download File View File

Permuted single-chain Arc

Tabtiang, R.K., Cezairliyan, B.O., Grant, R.A., Cochrane, J.C., Sauer, R.T.

(2005) Proc Natl Acad Sci U S A 102: 2305-2309

Released	2005-02-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli
Macromolecule	pArc (protein)

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1VBA \| pdb_00001vba	Download File View File

POLIOVIRUS (TYPE 3, SABIN STRAIN) (P3/SABIN, P3/LEON/12A(1)B) COMPLEXED WITH R78206

Grant, R.A., Hiremath, C.N., Filman, D.J., Syed, R., Andries, K., Hogle, J.M.

(1994) Curr Biol 4: 784-797

Released	1996-07-11
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Poliovirus type 3 (strains P3/LEON/37 AND P3/LEON 12A[1]B)
Macromolecule	POLIOVIRUS TYPE 3 (protein)
Unique Ligands	J78, MYR

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1VBB \| pdb_00001vbb	Download File View File

POLIOVIRUS (TYPE 3, SABIN STRAIN) (P3/SABIN, P3/LEON/12A(1)B) COMPLEXED WITH R80633

Grant, R.A., Hiremath, C.N., Filman, D.J., Syed, R., Andries, K., Hogle, J.M.

(1994) Curr Biol 4: 784-797

Released	1996-07-11
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Poliovirus type 3 (strains P3/LEON/37 AND P3/LEON 12A[1]B)
Macromolecule	POLIOVIRUS TYPE 3 (protein)
Unique Ligands	J80, MYR

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1VBC \| pdb_00001vbc	Download File View File

POLIOVIRUS (TYPE 3, SABIN STRAIN) (P3/SABIN, P3/LEON/12A(1)B) COMPLEXED WITH R77975

Grant, R.A., Hiremath, C.N., Filman, D.J., Syed, R., Andries, K., Hogle, J.M.

(1994) Curr Biol 4: 784-797

Released	1996-07-11
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Poliovirus type 3 (strains P3/LEON/37 AND P3/LEON 12A[1]B)
Macromolecule	POLIOVIRUS TYPE 3 (protein)
Unique Ligands	J77, MYR

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1VBD \| pdb_00001vbd	Download File View File

POLIOVIRUS (TYPE 1, MAHONEY STRAIN) COMPLEXED WITH R78206

Grant, R.A., Hiremath, C.N., Filman, D.J., Syed, R., Andries, K., Hogle, J.M.

(1994) Curr Biol 4: 784-797

Released	1996-07-11
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Human poliovirus 1 Mahoney
Macromolecule	POLIOVIRUS TYPE 1 MAHONEY (protein)
Unique Ligands	J78, MYR

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1VBE \| pdb_00001vbe	Download File View File

POLIOVIRUS (TYPE 3, SABIN STRAIN, MUTANT 242-H2) COMPLEXED WITH R78206

Grant, R.A., Hiremath, C.N., Filman, D.J., Syed, R., Andries, K., Hogle, J.M.

(1994) Curr Biol 4: 784-797

Released	1996-07-11
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Poliovirus type 3 (strains P3/LEON/37 AND P3/LEON 12A[1]B)
Macromolecule	POLIOVIRUS TYPE 3 (protein)
Unique Ligands	J78, MYR

1 to 25 of 116 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1DPS | pdb_00001dps

1DU0 | pdb_00001du0

1EAH | pdb_00001eah

1F2I | pdb_00001f2i

1G2D | pdb_00001g2d

1G2F | pdb_00001g2f

1JI4 | pdb_00001ji4

1JI5 | pdb_00001ji5

1JIG | pdb_00001jig

1LLM | pdb_00001llm

1O9R | pdb_00001o9r

1OU8 | pdb_00001ou8

1OU9 | pdb_00001ou9

1OUL | pdb_00001oul

1PIV | pdb_00001piv

1PO1 | pdb_00001po1

1PO2 | pdb_00001po2

1TME | pdb_00001tme

1TWB | pdb_00001twb

1U9P | pdb_00001u9p

1VBA | pdb_00001vba

1VBB | pdb_00001vbb

1VBC | pdb_00001vbc

1VBD | pdb_00001vbd

1VBE | pdb_00001vbe