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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "O'Hair, R.A.J."

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This query matches 13 Structures.

Refinements

Structure Determination Methodology

experimental (13)

Scientific Name of Source Organism

	Homo sapiens (6)
	Escherichia coli K-12 (3)
	Escherichia coli (2)
	Escherichia coli str. K-12 substr. MC4100 (1)
	Mycobacterium tuberculosis (1)
	Staphylococcus epidermidis RP62A (1)

Taxonomy

	Bacteria (7)
	Eukaryota (6)

Experimental Method

	X-RAY DIFFRACTION (12)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (13)
	RNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (5)
	3.0 - 3.5 (7)
	3.5 - 4.0 (1)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (5)
	2015 - 2019 (4)
	2020 - 2024 (1)

Enzyme Classification Name

	Isomerases (5)
	Hydrolases (3)
	Transferases (1)

Symmetry Type

	Asymmetric (9)
	Cyclic (4)

SCOP Classification

	All beta proteins (1)
	Multi-domain proteins (alpha and beta) (2)
	Alpha and beta proteins (a+b) (2)
	Artifacts (1)

AllSelected

1 to 13 of 13 Structures

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1ZVT \| pdb_00001zvt	Download File View File

Structure of the E. coli ParC C-terminal domain

Corbett, K.D., Schoeffler, A.J., Thomsen, N.D., Berger, J.M.

(2005) J Mol Biology 351: 545-561

Released	2005-07-05
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	Topoisomerase IV subunit A (protein)

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1ZVU \| pdb_00001zvu	Download File View File

Structure of the full-length E. coli ParC subunit

Corbett, K.D., Schoeffler, A.J., Thomsen, N.D., Berger, J.M.

(2005) J Mol Biology 351: 545-561

Released	2005-07-05
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	Topoisomerase IV subunit A (protein)

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3IBP \| pdb_00003ibp	Download File View File

The Crystal Structure of the Dimerization Domain of Escherichia coli Structural Maintenance of Chromosomes Protein MukB

Li, Y., Schoeffler, A.J., Berger, J.M., Oakley, M.G.

(2010) J Mol Biology 395: 11-19

Released	2010-01-26
Method	X-RAY DIFFRACTION 3.099 Å
Organisms	Escherichia coli K-12
Macromolecule	Chromosome partition protein mukB (protein)
Unique Ligands	NH4

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3ILW \| pdb_00003ilw	Download File View File

Structure of DNA gyrase subunit A N-terminal domain

Tretter, E.M., Schoeffler, A.J., Weisfield, S.R., Berger, J.M., TB Structural Genomics Consortium (TBSGC)

(2010) Proteins 78: 492-495

Released	2009-10-06
Method	X-RAY DIFFRACTION 1.603 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	DNA gyrase subunit A (protein)
Unique Ligands	GOL

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3NUH \| pdb_00003nuh	Download File View File

A domain insertion in E. coli GyrB adopts a novel fold that plays a critical role in gyrase function

Schoeffler, A.J., May, A.P., Berger, J.M.

(2010) Nucleic Acids Res 38: 7830-7844

Released	2010-08-11
Method	X-RAY DIFFRACTION 3.103 Å
Organisms	Escherichia coli K-12
Macromolecule	DNA gyrase subunit A (protein) DNA gyrase subunit B (protein)
Unique Ligands	MG

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3T6P \| pdb_00003t6p	Download File View File

IAP antagonist-induced conformational change in cIAP1 promotes E3 ligase activation via dimerization

Dueber, E.C., Schoeffler, A.J., Lingel, A., Elliott, M., Fedorova, A.V., Giannetti, A.M., Zobel, K., Maurer, B., Varfolomeev, E., Wu, P., Wallweber, H., Hymowitz, S., Deshayes, K., Vucic, D., Fairbrother, W.J.

(2011) Science 334: 376-380

Released	2011-11-02
Method	X-RAY DIFFRACTION 1.897 Å
Organisms	Homo sapiens
Macromolecule	Baculoviral IAP repeat-containing protein 2 (protein)
Unique Ligands	ZN

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4LRI \| pdb_00004lri	Download File View File

Anti CMV Fab Fragment

Stengel, K.F.

(2014) Proc Natl Acad Sci U S A 111: 8209-8214

Released	2014-05-21
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	MSL-109 Heavy Chain (protein) MSL-109 Light Chain (protein)

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4TMA \| pdb_00004tma	Download File View File

Crystal structure of gyrase bound to its inhibitor YacG

Vos, S.M., Lyubimov, A.Y., Hershey, D.M., Schoeffler, A.J., Berger, J.M.

(2014) Genes Dev 28: 1485-1497

Released	2014-07-23
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Escherichia coli K-12 Escherichia coli str. K-12 substr. MC4100
Macromolecule	DNA gyrase inhibitor YacG (protein) DNA gyrase subunit A (protein) DNA gyrase subunit B (protein)
Unique Ligands	ZN

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5CVL \| pdb_00005cvl	Download File View File

WDR48 (UAF-1), residues 2-580

HARRIS, S.F., YIN, J.

(2015) Structure 23: 2043-2054

Released	2015-10-07
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	WD repeat-containing protein 48 (protein)
Unique Ligands	AU, PO4

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5CVM \| pdb_00005cvm	Download File View File

USP46~ubiquitin BEA covalent complex

Harris, S.F., Yin, J.

(2015) Structure 23: 2043-2054

Released	2015-10-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Polyubiquitin-B (protein) Ubiquitin carboxyl-terminal hydrolase 46 (protein)
Unique Ligands	ZN

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5CVN \| pdb_00005cvn	Download File View File

WDR48 (2-580):USP46~ubiquitin ternary complex

Harris, S.F., Yin, J.

(2015) Structure 23: 2043-2054

Released	2015-10-07
Method	X-RAY DIFFRACTION 3.36 Å
Organisms	Homo sapiens
Macromolecule	Polyubiquitin-B (protein) Ubiquitin carboxyl-terminal hydrolase 46 (protein) WD repeat-containing protein 48 (protein)
Unique Ligands	ZN

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5CVO \| pdb_00005cvo	Download File View File

WDR48:USP46~ubiquitin ternary complex

Harris, S.F., Yin, J.

(2015) Structure 23: 2043-2054

Released	2015-10-07
Method	X-RAY DIFFRACTION 3.885 Å
Organisms	Homo sapiens
Macromolecule	Polyubiquitin-B (protein) Ubiquitin carboxyl-terminal hydrolase 46 (protein) WD repeat-containing protein 48 (protein)
Unique Ligands	ZN

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8DO6 \| pdb_00008do6	Download File View File

The structure of S. epidermidis Cas10-Csm bound to target RNA

Paraan, M., Stagg, S.M., Dunkle, J.A.

(2023) PLoS One 18: e0287461-e0287461

Released	2023-06-21
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Staphylococcus epidermidis RP62A
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 2

1 to 13 of 13 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1ZVT | pdb_00001zvt

Structure of the E. coli ParC C-terminal domain

1ZVU | pdb_00001zvu

Structure of the full-length E. coli ParC subunit

3IBP | pdb_00003ibp

The Crystal Structure of the Dimerization Domain of Escherichia coli Structural Maintenance of Chromosomes Protein MukB

3ILW | pdb_00003ilw

Structure of DNA gyrase subunit A N-terminal domain

3NUH | pdb_00003nuh

A domain insertion in E. coli GyrB adopts a novel fold that plays a critical role in gyrase function

3T6P | pdb_00003t6p

IAP antagonist-induced conformational change in cIAP1 promotes E3 ligase activation via dimerization

4LRI | pdb_00004lri

Anti CMV Fab Fragment

4TMA | pdb_00004tma

Crystal structure of gyrase bound to its inhibitor YacG

5CVL | pdb_00005cvl

WDR48 (UAF-1), residues 2-580

5CVM | pdb_00005cvm

USP46~ubiquitin BEA covalent complex

5CVN | pdb_00005cvn

WDR48 (2-580):USP46~ubiquitin ternary complex

5CVO | pdb_00005cvo

WDR48:USP46~ubiquitin ternary complex

8DO6 | pdb_00008do6

The structure of S. epidermidis Cas10-Csm bound to target RNA

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1ZVT | pdb_00001zvt

1ZVU | pdb_00001zvu

3IBP | pdb_00003ibp

3ILW | pdb_00003ilw

3NUH | pdb_00003nuh

3T6P | pdb_00003t6p

4LRI | pdb_00004lri

4TMA | pdb_00004tma

5CVL | pdb_00005cvl

5CVM | pdb_00005cvm

5CVN | pdb_00005cvn

5CVO | pdb_00005cvo

8DO6 | pdb_00008do6