RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Mutny, M."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 108 Structures.

Refinements

Structure Determination Methodology

experimental (108)

Scientific Name of Source Organism

	Bos taurus (57)
	Pyrococcus furiosus (8)
	Homo sapiens (7)
	Pseudomonas putida (7)
	Escherichia coli (5)
	Mus musculus (4)
	Rattus norvegicus (4)
	Pseudomonas aeruginosa (2)
	Agrobacterium sp. KNK712 (1)
	Aphanothece sacrum (1)

More...

Taxonomy

	Eukaryota (75)
	Bacteria (19)
	Archaea (8)
	Riboviria (5)
	Duplodnaviria (1)

Experimental Method

X-RAY DIFFRACTION (108)

Polymer Entity Type

	Protein (108)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (41)
	2.0 - 2.5 (31)
	2.5 - 3.0 (19)
	3.0 - 3.5 (6)
	3.5 - 4.0 (7)
	> 4.5 (1)

Release Date

	1975 - 1979 (1)
	1990 - 1994 (3)
	1995 - 1999 (10)
	2000 - 2004 (17)
	2005 - 2009 (32)
	2010 - 2014 (14)
	2015 - 2019 (17)
	2020 - 2024 (14)

Enzyme Classification Name

	Oxidoreductases (53)
	Translocases (56)
	Hydrolases (11)
	Lyases (6)
	Ligases (2)
	Transferases (1)

Membrane Protein Annotation

	PDBTM (61)
	MemProtMD (46)
	mpstruc (31)
	OPM (6)

Symmetry Type

	Asymmetric (64)
	Cyclic (36)
	Dihedral (8)
	Icosahedral (5)
	Helical (1)

SCOP Classification

	Membrane and cell surface proteins and peptides (49)
	All alpha proteins (62)
	All beta proteins (55)
	Small proteins (47)
	Alpha and beta proteins (a+b) (13)
	Alpha and beta proteins (a/b) (11)
	Artifacts (4)
	Low resolution protein structures (1)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 108 Structures

Page 1 of 5

Sort by

Explore in 3D

1CYC \| pdb_00001cyc	Download File View File

THE CRYSTAL STRUCTURE OF BONITO (KATSUO) FERROCYTOCHROME C AT 2.3 ANGSTROMS RESOLUTION. II. STRUCTURE AND FUNCTION

Tanaka, N., Yamane, T., Tsukihara, T., Ashida, T., Kakudo, M.

(1975) J Biochem 77: 147-162

Released	1976-10-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Katsuwonus pelamis
Macromolecule	FERROCYTOCHROME C (protein)
Unique Ligands	HEC

Explore in 3D

1DDZ \| pdb_00001ddz	Download File View File

X-RAY STRUCTURE OF A BETA-CARBONIC ANHYDRASE FROM THE RED ALGA, PORPHYRIDIUM PURPUREUM R-1

Mitsuhashi, S., Mizushima, T., Yamashita, E., Miyachi, S., Tsukihara, T.

(2000) J Biological Chem 275: 5521-5526

Released	2000-03-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Porphyridium purpureum
Macromolecule	CARBONIC ANHYDRASE (protein)
Unique Ligands	ZN

Explore in 3D

1ERZ \| pdb_00001erz	Download File View File

CRYSTAL STRUCTURE OF N-CARBAMYL-D-AMINO ACID AMIDOHYDROLASE WITH A NOVEL CATALYTIC FRAMEWORK COMMON TO AMIDOHYDROLASES

Nakai, T., Hasegawa, T., Yamashita, E., Yamamoto, M., Kumasaka, T., Ueki, T., Nanba, H., Ikenaka, Y., Takahashi, S., Sato, M., Tsukihara, T.

(2000) Structure 8: 729-737

Released	2001-04-06
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Agrobacterium sp. KNK712
Macromolecule	N-CARBAMYL-D-AMINO ACID AMIDOHYDROLASE (protein)

Explore in 3D

1FRR \| pdb_00001frr	Download File View File

CRYSTAL STRUCTURE OF [2FE-2S] FERREDOXIN I FROM EQUISETUM ARVENSE AT 1.8 ANGSTROMS RESOLUTION

Tsukihara, T.

(1994) Acta Crystallogr D Biol Crystallogr 50: 167-174

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Equisetum arvense
Macromolecule	FERREDOXIN I (protein)
Unique Ligands	FES

Explore in 3D

1FXI \| pdb_00001fxi	Download File View File

STRUCTURE OF THE [2FE-2S] FERREDOXIN I FROM THE BLUE-GREEN ALGA APHANOTHECE SACRUM AT 2.2 ANGSTROMS RESOLUTION

Tsukihara, T.

(1990) J Mol Biology 216: 399-410

Released	1991-10-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Aphanothece sacrum
Macromolecule	FERREDOXIN I (protein)
Unique Ligands	FES

Explore in 3D

1GCJ \| pdb_00001gcj	Download File View File

N-TERMINAL FRAGMENT OF IMPORTIN-BETA

Lee, S.J., Imamoto, N., Sakai, H., Nakagawa, A., Kose, S., Koike, M., Yamamoto, M., Kumasaka, T., Yoneda, Y., Tsukihara, T.

(2000) J Mol Biology 302: 251-264

Released	2000-10-18
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mus musculus
Macromolecule	IMPORTIN BETA (protein)

Explore in 3D

1IOF \| pdb_00001iof	Download File View File

X-RAY CRYSTALLINE STRUCTURES OF PYRROLIDONE CARBOXYL PEPTIDASE FROM A HYPERTHERMOPHILE, PYROCOCCUS FURIOSUS, AND ITS CYS-FREE MUTANT

Tanaka, H., Chinami, M., Ota, M., Tsukihara, T., Yutani, K.

(2001) J Biochem 130: 107-118

Released	2001-03-21
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Pyrococcus furiosus
Macromolecule	PYRROLIDONE CARBOXYL PEPTIDASE (protein)

Explore in 3D

1IOI \| pdb_00001ioi	Download File View File

x-ray crystalline structures of pyrrolidone carboxyl peptidase from a hyperthermophile, pyrococcus furiosus, and its cys-free mutant

Tanaka, H., Chinami, M., Ota, M., Tsukihara, T., Yutani, K.

(2001) J Biochem 130: 107-118

Released	2001-03-21
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Pyrococcus furiosus
Macromolecule	PYRROLIDONE CARBOXYL PEPTIDASE (protein)

Explore in 3D

1IRU \| pdb_00001iru	Download File View File

Crystal Structure of the mammalian 20S proteasome at 2.75 A resolution

Unno, M., Mizushima, T., Morimoto, Y., Tomisugi, Y., Tanaka, K., Yasuoka, N., Tsukihara, T.

(2002) Structure 10: 609-618

Released	2002-05-22
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 14
Unique Ligands	MG

Explore in 3D

1K9A \| pdb_00001k9a	Download File View File

Crystal structure analysis of full-length carboxyl-terminal Src kinase at 2.5 A resolution

Ogawa, A., Takayama, Y., Nagata, A., Chong, K.T., Takeuchi, S., Sakai, H., Nakagawa, A., Nada, S., Okada, M., Tsukihara, T.

(2002) J Biological Chem 277: 14351-14354

Released	2002-03-20
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Rattus norvegicus
Macromolecule	Carboxyl-terminal Src kinase (protein)

Explore in 3D

1O5W \| pdb_00001o5w	Download File View File

The structure basis of specific recognitions for substrates and inhibitors of rat monoamine oxidase A

Ma, J., Yoshimura, M., Yamashita, E., Nakagawa, A., Ito, A., Tsukihara, T.

(2004) J Mol Biology 338: 103-114

Released	2004-04-20
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Rattus norvegicus
Macromolecule	Amine oxidase [flavin-containing] A (protein)
Unique Ligands	FAD, MLG

Explore in 3D

1OCC \| pdb_00001occ	Download File View File

STRUCTURE OF BOVINE HEART CYTOCHROME C OXIDASE AT THE FULLY OXIDIZED STATE

Tsukihara, T., Aoyama, H., Yamashita, E., Tomizaki, T., Yamaguchi, H., Shinzawa-Itoh, K., Nakashima, R., Yaono, R., Yoshikawa, S.

(1996) Science 272: 1136-1144

Released	1996-12-07
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 13
Unique Ligands	CU, HEA, MG, ZN

Explore in 3D

1OCO \| pdb_00001oco	Download File View File

BOVINE HEART CYTOCHROME C OXIDASE IN CARBON MONOXIDE-BOUND STATE

Tsukihara, T., Yao, M.

(1998) Science 280: 1723-1729

Released	1999-07-22
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 13
Unique Ligands	CMO, CU, HEA, MG, NA, ZN

Explore in 3D

1OCR \| pdb_00001ocr	Download File View File

BOVINE HEART CYTOCHROME C OXIDASE IN THE FULLY REDUCED STATE

Tsukihara, T., Yao, M.

(1998) Science 280: 1723-1729

Released	1999-07-29
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 13
Unique Ligands	CU, HEA, MG, NA, ZN

Explore in 3D

1OCZ \| pdb_00001ocz	Download File View File

BOVINE HEART CYTOCHROME C OXIDASE IN AZIDE-BOUND STATE

Tsukihara, T., Yao, M.

(1998) Science 280: 1723-1729

Released	1999-07-22
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 13
Unique Ligands	AZI, CU, HEA, MG, NA, ZN

Explore in 3D

1QVC \| pdb_00001qvc	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF SINGLE STRANDED DNA BINDING PROTEIN (SSB) FROM E.COLI

Matsumoto, T., Morimoto, Y., Shibata, N., Shimamoto, N., Tsukihara, T., Yasuoka, N.

(2000) J Biochem 127: 329-335

Released	2000-06-05
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	SINGLE STRANDED DNA BINDING PROTEIN MONOMER (protein)

Explore in 3D

1TNV \| pdb_00001tnv	Download File View File

CRYSTAL STRUCTURAL ANALYSIS OF TOBACCO NECROSIS VIRUS (TNV) AT 5 ANGSTROMS RESOLUTION

Tsukihara, T.

(1994) Acta Crystallogr D Biol Crystallogr 50: 878-883

Released	1994-12-20
Method	X-RAY DIFFRACTION 5 Å
Organisms	unidentified tobacco necrosis virus
Macromolecule	TOBACCO NECROSIS VIRUS (SUBUNIT VP1) (protein) TOBACCO NECROSIS VIRUS (SUBUNIT VP3) (protein)

Explore in 3D

1UF2 \| pdb_00001uf2	Download File View File

The Atomic Structure of Rice dwarf Virus (RDV)

Nakagawa, A., Miyazaki, N., Taka, J., Naitow, H., Ogawa, A., Fujimoto, Z., Mizuno, H., Higashi, T., Watanabe, Y., Omura, T., Cheng, R.H., Tsukihara, T.

(2003) Structure 11: 1227-1238

Released	2003-10-14
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Rice dwarf virus
Macromolecule	Core protein P3 (protein) Outer capsid protein P8 (protein) Structural protein P7 (protein)

Explore in 3D

1UKL \| pdb_00001ukl	Download File View File

Crystal structure of Importin-beta and SREBP-2 complex

Lee, S.J., Sekimoto, T., Yamashita, E., Nagoshi, E., Nakagawa, A., Imamoto, N., Yoshimura, M., Sakai, H., Tsukihara, T., Yoneda, Y.

(2003) Science 302: 1571-1575

Released	2003-12-09
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Importin beta-1 subunit (protein) Sterol regulatory element binding protein-2 (protein)

Explore in 3D

1UMH \| pdb_00001umh	Download File View File

Structural basis of sugar-recognizing ubiquitin ligase

Mizushima, T., Hirao, T., Yoshida, Y., Lee, S.J., Chiba, T., Iwai, K., Yamaguchi, Y., Kato, K., Tsukihara, T., Tanaka, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) Nat Struct Mol Biol 11: 365-370

Released	2004-04-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	F-box only protein 2 (protein)
Unique Ligands	NI

Explore in 3D

1UMI \| pdb_00001umi	Download File View File

Structural basis of sugar-recognizing ubiquitin ligase

Mizushima, T., Hirao, T., Yoshida, Y., Lee, S.J., Chiba, T., Iwai, K., Yamaguchi, Y., Kato, K., Tsukihara, T., Tanaka, K.

(2004) Nat Struct Mol Biol 11: 365-370

Released	2004-04-06
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus
Macromolecule	F-box only protein 2 (protein)
Unique branched monosaccharides	NAG, NDG

Explore in 3D

1V54 \| pdb_00001v54	Download File View File

Bovine heart cytochrome c oxidase at the fully oxidized state

Tsukihara, T., Shimokata, K., Katayama, Y., Shimada, H., Muramoto, K., Aoyama, H., Mochizuki, M., Shinzawa-Itoh, K., Yamashita, E., Yao, M., Ishimura, Y., Yoshikawa, S.

(2003) Proc Natl Acad Sci U S A 100: 15304-15309

Released	2003-12-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 13
Unique Ligands	CDL, CHD, CU, CUA, DMU, HEA, MG, NA, PEK, PGV, PSC, TGL, UNX, ZN

Explore in 3D

1V55 \| pdb_00001v55	Download File View File

Bovine heart cytochrome c oxidase at the fully reduced state

Tsukihara, T., Shimokata, K., Katayama, Y., Shimada, H., Muramoto, K., Aoyama, H., Mochizuki, M., Shinzawa-Itoh, K., Yamashita, E., Yao, M., Ishimura, Y., Yoshikawa, S.

(2003) Proc Natl Acad Sci U S A 100: 15304-15309

Released	2003-12-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bos taurus
Macromolecule	Unique protein chains: 13
Unique Ligands	CDL, CHD, CU, CUA, DMU, HEA, MG, NA, PEK, PGV, PSC, TGL, UNX, ZN