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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "McAndrew, C."

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Search Summary

This query matches 112 Structures.

Refinements

Structure Determination Methodology

experimental (112)

Scientific Name of Source Organism

	Homo sapiens (65)
	Actinia fragacea (12)
	Staphylococcus aureus subsp. aureus Mu50 (11)
	Streptococcus pyogenes SSI-1 (8)
	Oryctolagus cuniculus (7)
	Lama glama (6)
	Mus musculus (6)
	Human immunodeficiency virus 1 (5)
	Pseudomonas putida (5)
	Camelus dromedarius (4)

More...

Taxonomy

	Eukaryota (88)
	Bacteria (29)
	Riboviria (8)

Experimental Method

X-RAY DIFFRACTION (112)

Polymer Entity Type

Protein (112)

Refinement Resolution (Å)

	1.0 - 1.5 (24)
	1.5 - 2.0 (49)
	2.0 - 2.5 (21)
	2.5 - 3.0 (15)
	3.0 - 3.5 (3)

Release Date

	2005 - 2009 (3)
	2010 - 2014 (15)
	2015 - 2019 (58)
	2020 - 2024 (35)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (23)
	Transferases (8)
	Isomerases (6)
	Oxidoreductases (2)
	Lyases (1)

Membrane Protein Annotation

	mpstruc (8)
	OPM (2)
	MemProtMD (1)
	PDBTM (1)

Symmetry Type

	Asymmetric (68)
	Cyclic (45)
	Dihedral (1)

SCOP Classification

	All beta proteins (27)
	Alpha and beta proteins (a/b) (18)
	Alpha and beta proteins (a+b) (9)
	All alpha proteins (3)
	Artifacts (4)

AllSelected

1 to 25 of 112 Structures

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2PZV \| pdb_00002pzv	Download File View File

Crystal Structure of Ketosteroid Isomerase D40N from Pseudomonas Putida (pksi) with bound Phenol

Pybus, B., Caaveiro, J.M.M., Petsko, G.A., Ringe, D.

(2006) PLoS Biol 4: 501-519

Released	2007-06-12
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Pseudomonas putida
Macromolecule	Steroid Delta-isomerase (protein)
Unique Ligands	IPH

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3CPO \| pdb_00003cpo	Download File View File

Crystal structure of ketosteroid isomerase D40N with bound 2-fluorophenol

Caaveiro, J.M.M., Pybus, B., Ringe, D., Petsko, G.

(2008) J Am Chem Soc 130: 13696-13708

Released	2008-09-23
Method	X-RAY DIFFRACTION 1.24 Å
Organisms	Pseudomonas putida
Macromolecule	Delta(5)-3-ketosteroid isomerase (protein)
Unique Ligands	FP2

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3FZW \| pdb_00003fzw	Download File View File

Crystal Structure of Ketosteroid Isomerase D40N-D103N from Pseudomonas putida (pKSI) with bound equilenin

Caaveiro, J.M.M., Ringe, D., Petsko, G.A.

(2009) Biochemistry 48: 6932-6939

Released	2009-06-02
Method	X-RAY DIFFRACTION 1.32 Å
Organisms	Pseudomonas putida
Macromolecule	Steroid Delta-isomerase (protein)
Unique Ligands	EQU, GOL, IPA

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3QUG \| pdb_00003qug	Download File View File

Structure of heme transport protein IsdH-NEAT3 from S. aureus in complex with Gallium-porphyrin

Moriwaki, Y., Caaveiro, J.M.M., Tsumoto, K.

(2011) Biochemistry 50: 7311-7320

Released	2011-03-30
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Staphylococcus aureus subsp. aureus Mu50
Macromolecule	Iron-regulated surface determinant protein H (protein)
Unique Ligands	GIX, GOL, SO4

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3QUH \| pdb_00003quh	Download File View File

Structure of heme transport protein IsdH-NEAT3 from S. aureus in complex with Manganese(III)-porphyrin

Moriwaki, Y., Caaveiro, J.M.M., Tsumoto, K.

(2011) Biochemistry 50: 7311-7320

Released	2011-03-30
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Staphylococcus aureus subsp. aureus Mu50
Macromolecule	Iron-regulated surface determinant protein H (protein)
Unique Ligands	GOL, MNR

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3ST7 \| pdb_00003st7	Download File View File

Crystal Structure of capsular polysaccharide assembling protein CapF from staphylococcus aureus

Miyafusa, T., Tanaka, Y., Kuroda, M., Yao, M., Watanabe, M., Ohta, T., Tanaka, I., Caaveiro, J.M.M., Tsumoto, K.

(2012) Biochem J 443: 671-680

Released	2012-02-15
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Staphylococcus aureus subsp. aureus Mu50
Macromolecule	Capsular polysaccharide synthesis enzyme Cap5F (protein)
Unique Ligands	GOL, ZN

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3VGN \| pdb_00003vgn	Download File View File

Crystal Structure of Ketosteroid Isomerase D40N from Pseudomonas putida (pKSI) with bound 3-fluoro-4-nitrophenol

Caaveiro, J.M.M., Pybus, B., Ringe, D., Petsko, G.A., Sigala, P.A.

(2013) Proc Natl Acad Sci U S A 110: E2552-E2561

Released	2012-08-22
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Pseudomonas putida
Macromolecule	Steroid Delta-isomerase (protein)
Unique Ligands	FNN

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3VHR \| pdb_00003vhr	Download File View File

Crystal Structure of capsular polysaccharide assembling protein CapF from Staphylococcus aureus in space group C2221

Miyafusa, T., Yoshikazu, T., Caaveiro, J.M.M., Tsumoto, K.

(2012) Biochem J 443: 671-680

Released	2012-02-15
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Staphylococcus aureus subsp. aureus Mu50
Macromolecule	Capsular polysaccharide synthesis enzyme Cap5F (protein)
Unique Ligands	FMT, ZN

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3VSY \| pdb_00003vsy	Download File View File

High-resolution crystal structure of wild-type KSI in the apo form at neutral pH

Caaveiro, J.M.M., Kobe, A., Tsumoto, K.

(2013) J Med Chem 56: 2155-2159

Released	2013-02-27
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Pseudomonas putida
Macromolecule	Steroid Delta-isomerase (protein)
Unique Ligands	SO4

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3VTM \| pdb_00003vtm	Download File View File

Structure of heme transport protein IsdH-NEAT3 from S. aureus in complex with Indium-porphyrin

Vu, N.T., Caaveiro, J.M.M., Moriwaki, Y., Tsumoto, K.

(2013) Protein Sci 22: 942-953

Released	2013-05-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Staphylococcus aureus subsp. aureus Mu50
Macromolecule	Iron-regulated surface determinant protein H (protein)
Unique Ligands	3ZZ, GOL

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3VUA \| pdb_00003vua	Download File View File

Apo IsdH-NEAT3 in space group P3121 at a resolution of 1.85 A

Vu, N.T., Caaveiro, J.M.M., Moriwaki, Y., Tsumoto, K.

To be published

Released	2013-06-26
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Staphylococcus aureus subsp. aureus Mu50
Macromolecule	Iron-regulated surface determinant protein H (protein)
Unique Ligands	ACT, GOL, SO4

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3VWI \| pdb_00003vwi	Download File View File

High resolution crystal structure of FraC in the monomeric form

Tanaka, K., Morante, K., Caaveiro, J.M.M., Gonzalez-Manas, J.M., Tsumoto, K.

(2015) Nat Commun 6: 6337-6337

Released	2013-08-28
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Actinia fragacea
Macromolecule	Fragaceatoxin C (protein)
Unique Ligands	CL, GOL, NH4, SO4

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3W9P \| pdb_00003w9p	Download File View File

Crystal structure of monomeric FraC (second crystal form)

Caaveiro, J.M.M., Tanaka, K., Tsumoto, K.

(2015) Nat Commun 6: 6337-6337

Released	2014-04-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Actinia fragacea
Macromolecule	Fragaceatoxin C (protein)

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4G5H \| pdb_00004g5h	Download File View File

Crystal structure of capsular polysaccharide synthesizing enzyme CapE from Staphylococcus aureus in complex with by-product

Miyafusa, T., Caaveiro, J.M.M., Tanaka, Y., Tsumoto, K.

(2013) FEBS Lett 587: 3824-3830

Released	2013-08-28
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Staphylococcus aureus subsp. aureus Mu50
Macromolecule	Capsular polysaccharide synthesis enzyme Cap8E (protein)
Unique Ligands	FMT, NA, NAP, UD7

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4P2G \| pdb_00004p2g	Download File View File

Crystal structure of DJ-1 in sulfinic acid form (aged crystal)

Tashiro, S., Wu, C.-X., Hoang, Q.Q., Caaveiro, J.M.M., Tsumoto, K.

(2014) Biochemistry 53: 2218-2220

Released	2014-04-09
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Homo sapiens
Macromolecule	Protein DJ-1 (protein)
Unique Ligands	1PE, EDO

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4P34 \| pdb_00004p34	Download File View File

Crystal structure of DJ-1 in sulfenic acid form (fresh crystal)

Tashiro, S., Wu, C.-X., Hoang, Q.Q., Caaveiro, J.M.M., Tsumoto, K.

(2014) Biochemistry 53: 2218-2220

Released	2014-04-09
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Protein DJ-1 (protein)
Unique Ligands	1PE

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4P35 \| pdb_00004p35	Download File View File

Crystal structure of DJ-1 with Zinc(II) bound (crystal I)

Tashiro, S., Wu, C.-X., Hoang, Q.Q., Caaveiro, J.M.M., Tsumoto, K.

(2014) Biochemistry 53: 2218-2220

Released	2014-04-09
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	Protein DJ-1 (protein)
Unique Ligands	CL, GOL, ZN

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4P36 \| pdb_00004p36	Download File View File

Crystal structure of DJ-1 With Zn(II) bound (crystal 2)

Tashiro, S., Wu, C.-X., Hoang, Q.Q., Caaveiro, J.M.M., Tsumoto, K.

(2014) Biochemistry 53: 2218-2220

Released	2014-04-09
Method	X-RAY DIFFRACTION 1.182 Å
Organisms	Homo sapiens
Macromolecule	Protein DJ-1 (protein)
Unique Ligands	P15, ZN

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4TSL \| pdb_00004tsl	Download File View File

Crystal structure of FraC with POC bound (crystal form I)

Caaveiro, J.M.M., Tanaka, K., Tsumoto, K.

(2015) Nat Commun 6: 6337-6337

Released	2015-03-04
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Actinia fragacea
Macromolecule	Fragaceatoxin C (protein)
Unique Ligands	ACT, FMT, GOL, PC, SO4

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4TSN \| pdb_00004tsn	Download File View File

Crystal structure of FraC with POC bound (crystal form II)

Caaveiro, J.M.M., Tanaka, K., Tsumoto, K.

(2015) Nat Commun 6: 6337-6337

Released	2015-03-04
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Actinia fragacea
Macromolecule	Fragaceatoxin C (protein)
Unique Ligands	ACT, GOL, PC, SO4

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4TSO \| pdb_00004tso	Download File View File

Crystal structure of FraC with DHPC bound (crystal form I)

Caaveiro, J.M.M., Tanaka, K., Tsumoto, K.

(2015) Nat Commun 6: 6337-6337

Released	2015-03-04
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Actinia fragacea
Macromolecule	Fragaceatoxin C (protein)
Unique Ligands	HXG, PO4, SO4

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4TSP \| pdb_00004tsp	Download File View File

Crystal structure of FraC with DHPC bound (crystal form II)

Caaveiro, J.M.M., Tanaka, K., Tsumoto, K.

(2015) Nat Commun 6: 6337-6337

Released	2015-03-04
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Actinia fragacea
Macromolecule	Fragaceatoxin C (protein)
Unique Ligands	HXG, PC, PO4, SO4

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4TSQ \| pdb_00004tsq	Download File View File

Crystal structure of FraC with DHPC bound (crystal form III)

Caaveiro, J.M.M., Tanaka, K., Tsumoto, K.

(2015) Nat Commun 6: 6337-6337

Released	2015-03-04
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Actinia fragacea
Macromolecule	Fragaceatoxin C (protein)
Unique Ligands	CL, HXG, PC, SCN

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4TSY \| pdb_00004tsy	Download File View File

Crystal structure of FraC with lipids

Caaveiro, J.M.M., Tanaka, K., Tsumoto, K.

(2015) Nat Commun 6: 6337-6337

Released	2015-03-04
Method	X-RAY DIFFRACTION 3.14 Å
Organisms	Actinia fragacea
Macromolecule	Fragaceatoxin C (protein)
Unique Ligands	HTO, HXJ, SO4

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4W4N \| pdb_00004w4n	Download File View File

Crystal structure of human Fc at 1.80 A

Caaveiro, J.M.M., Kiyoshi, M., Tsumoto, K.

(2015) Nat Commun 6: 6866-6866

Released	2015-04-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Ig gamma-1 chain C region (protein)
Unique Ligands	GOL
Unique branched monosaccharides	BMA, FUC, MAN, NAG

1 to 25 of 112 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2PZV | pdb_00002pzv

3CPO | pdb_00003cpo

3FZW | pdb_00003fzw

3QUG | pdb_00003qug

3QUH | pdb_00003quh

3ST7 | pdb_00003st7

3VGN | pdb_00003vgn

3VHR | pdb_00003vhr

3VSY | pdb_00003vsy

3VTM | pdb_00003vtm

3VUA | pdb_00003vua

3VWI | pdb_00003vwi

3W9P | pdb_00003w9p

4G5H | pdb_00004g5h

4P2G | pdb_00004p2g

4P34 | pdb_00004p34

4P35 | pdb_00004p35

4P36 | pdb_00004p36

4TSL | pdb_00004tsl

4TSN | pdb_00004tsn

4TSO | pdb_00004tso

4TSP | pdb_00004tsp

4TSQ | pdb_00004tsq

4TSY | pdb_00004tsy

4W4N | pdb_00004w4n