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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Lu, X."

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Search Summary

This query matches 361 Structures.

Refinements

Structure Determination Methodology

experimental (361)

Scientific Name of Source Organism

	Homo sapiens (206)
	Human immunodeficiency virus 1 (40)
	Severe acute respiratory syndrome coronavirus 2 (20)
	Mus musculus (15)
	Macaca mulatta (9)
	Simian rotavirus (9)
	Maribacter polysiphoniae (7)
	Influenza A virus (A/Indonesia/5/2005(H5N1)) (6)
	Thermotoga maritima MSB8 (6)
	Influenza A virus (5)

More...

Taxonomy

	Eukaryota (253)
	Riboviria (118)
	Bacteria (48)
	Duplodnaviria (3)
	other sequences (2)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (273)
	ELECTRON MICROSCOPY (81)
	SOLUTION NMR (7)

Polymer Entity Type

	Protein (361)
	RNA (23)
	DNA (15)

Refinement Resolution (Å)

	1.0 - 1.5 (11)
	1.5 - 2.0 (60)
	2.0 - 2.5 (100)
	2.5 - 3.0 (88)
	3.0 - 3.5 (56)
	3.5 - 4.0 (28)
	4.0 - 4.5 (9)
	> 4.5 (1)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (9)
	2000 - 2004 (11)
	2005 - 2009 (20)
	2010 - 2014 (49)
	2015 - 2019 (85)
	2020 - 2024 (166)
	2025 - 2029 (20)

Enzyme Classification Name

	Transferases (102)
	Hydrolases (37)
	Oxidoreductases (16)
	Lyases (8)
	Ligases (10)
	Translocases (3)
	Isomerases (1)

Membrane Protein Annotation

	PDBTM (27)
	MemProtMD (14)
	OPM (14)
	mpstruc (11)

Symmetry Type

	Asymmetric (239)
	Cyclic (113)
	Dihedral (14)

SCOP Classification

	All beta proteins (57)
	Alpha and beta proteins (a+b) (49)
	Artifacts (40)
	Alpha and beta proteins (a/b) (29)
	Coiled coil proteins (14)
	Multi-domain proteins (alpha and beta) (20)
	All alpha proteins (10)
	Membrane and cell surface proteins and peptides (11)
	Small proteins (2)

AllSelected

1 to 25 of 361 Structures

Page 1 of 15

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1BL4 \| pdb_00001bl4	Download File View File

FKBP MUTANT F36V COMPLEXED WITH REMODELED SYNTHETIC LIGAND

Hatada, M.H., Clackson, T., Yang, W., Rozamus, L.W., Amara, J., Rollins, C.T., Stevenson, L.F., Magari, S.R., Wood, S.A., Courage, N.L., Lu, X., Cerasoli Junior, F., Gilman, M., Holt, D.

(1998) Proc Natl Acad Sci U S A 95: 10437-10442

Released	1998-09-02
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (FK506 BINDING PROTEIN) (protein)
Unique Ligands	AP1

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1BQM \| pdb_00001bqm	Download File View File

HIV-1 RT/HBY 097

Hsiou, Y., Das, K., Ding, J., Arnold, E.

(1998) J Mol Biology 284: 313-323

Released	1999-01-06
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	REVERSE TRANSCRIPTASE (protein)
Unique Ligands	HBY

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1BQN \| pdb_00001bqn	Download File View File

TYR 188 LEU HIV-1 RT/HBY 097

Hsiou, Y., Das, K., Ding, J., Arnold, E.

(1998) J Mol Biology 284: 313-323

Released	1999-01-06
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	REVERSE TRANSCRIPTASE (protein)
Unique Ligands	HBY

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1DLO \| pdb_00001dlo	Download File View File

HUMAN IMMUNODEFICIENCY VIRUS TYPE 1

Hsiou, Y., Ding, J., Das, K., Hughes, S., Arnold, E.

(1996) Structure 4: 853-860

Released	1996-08-01
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 REVERSE TRANSCRIPTASE (protein)

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1DRS \| pdb_00001drs	Download File View File

THREE-DIMENSIONAL STRUCTURE OF THE RGD-CONTAINING NEUROTOXIN HOMOLOGUE, DENDROASPIN

Sutcliffe, M.J., Jaseja, M., Hyde, E.I., Lu, X., Williams, J.A.

(1994) Nat Struct Biol 1: 802-807

Released	1994-12-20
Method	SOLUTION NMR
Organisms	Dendroaspis jamesoni kaimosae
Macromolecule	DENDROASPIN (protein)

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1FBZ \| pdb_00001fbz	Download File View File

Structure-based design of a novel, osteoclast-selective, nonpeptide Src SH2 inhibitor with in vivo anti-resorptive activity

Shakespeare, W., Yang, M., Bohacek, R., Cerasoli, F., Stebbis, K., Sundaramoorthi, R., Vu, C., Pradeepan, S., Metcalf, C., Haraldson, C., Merry, T., Dalgarno, D., Narula, S., Hatada, M., Lu, X., Van Schravendijk, M.R., Adams, S., Violette, S., Smith, J., Guan, W., Bartlett, C., Herson, J., Iuliucci, J., Weigele, M., Sawyer, T.

(2000) Proc Natl Acad Sci U S A 97: 9373-9378

Released	2000-08-23
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	PROTO-ONCOGENE TYROSINE-PROTEIN KINASE LCK (protein)
Unique Ligands	CC1

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1HNI \| pdb_00001hni	Download File View File

STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE IN A COMPLEX WITH THE NONNUCLEOSIDE INHIBITOR ALPHA-APA R 95845 AT 2.8 ANGSTROMS RESOLUTION

Ding, J., Das, K., Arnold, E.

(1995) Structure 3: 365-379

Released	1995-06-03
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P51) (protein) HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P66) (protein)
Unique Ligands	AAA

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1HNV \| pdb_00001hnv	Download File View File

STRUCTURE OF HIV-1 RT(SLASH)TIBO R 86183 COMPLEX REVEALS SIMILARITY IN THE BINDING OF DIVERSE NONNUCLEOSIDE INHIBITORS

Das, K., Ding, J., Arnold, E.

(1995) Nat Struct Biol 2: 407-415

Released	1995-07-10
Method	X-RAY DIFFRACTION 3 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P51) (protein) HIV-1 REVERSE TRANSCRIPTASE (SUBUNIT P66) (protein)
Unique Ligands	TBO

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1HPZ \| pdb_00001hpz	Download File View File

HUMAN IMMUNODEFICIENCY VIRUS TYPE 1

Ding, J., Hsiou, Y., Arnold, E.

(2001) J Mol Biology 309: 437-445

Released	2001-05-30
Method	X-RAY DIFFRACTION 3 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	POL POLYPROTEIN (protein)
Unique Ligands	AAP

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1IJR \| pdb_00001ijr	Download File View File

Crystal structure of LCK SH2 complexed with nonpeptide phosphotyrosine mimetic

Kawahata, N.H., Yang, M.H., Luke, G.P., Shakespeare, W.C., Sundaramoorthi, R.

(2001) Bioorg Med Chem Lett 11: 2319-2323

Released	2002-05-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	PROTO-ONCOGENE TYROSINE-PROTEIN KINASE LCK (protein)
Unique Ligands	CC0

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1S6P \| pdb_00001s6p	Download File View File

CRYSTAL STRUCTURE OF HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 REVERSE TRANSCRIPTASE (RT) IN COMPLEX WITH JANSSEN-R100943

Das, K., Arnold, E.

(2004) J Med Chem 47: 2550-2560

Released	2004-05-11
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	POL polyprotein [Contains: Reverse transcriptase] (protein)
Unique Ligands	IET, MG

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1S6Q \| pdb_00001s6q	Download File View File

CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE (RT) IN COMPLEX WITH JANSSEN-R147681

Das, K., Arnold, E.

(2004) J Med Chem 47: 2550-2560

Released	2004-05-11
Method	X-RAY DIFFRACTION 3 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	POL polyprotein [Contains: Reverse transcriptase] (protein)
Unique Ligands	TPB

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1S9E \| pdb_00001s9e	Download File View File

CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE (RT) IN COMPLEX WITH JANSSEN-R129385

Das, K., Clark Jr., A.D., Ludovici, D.W., Kukla, M.J., Decorte, B., Lewi, P.J., Hughes, S.H., Janssen, P.A., Arnold, E.

(2004) J Med Chem 47: 2550-2560

Released	2004-05-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	POL polyprotein [Contains: Reverse transcriptase] (protein) POL polyprotein [Contains:Reverse transcriptase] (protein)
Unique Ligands	ADB

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1S9G \| pdb_00001s9g	Download File View File

CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE (RT) IN COMPLEX WITH JANSSEN-R120394.

Das, K., Clark Jr., A.D., Ludovici, D.W., Kukla, M.J., Decorte, B., Lewi, P.J., Hughes, S.H., Janssen, P.A., Arnold, E.

(2004) J Med Chem 47: 2550-2560

Released	2004-05-11
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	POL polyprotein [Contains: Reverse transcriptase] (protein)
Unique Ligands	ABZ

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1SUQ \| pdb_00001suq	Download File View File

CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTASE (RT) IN COMPLEX WITH JANSSEN-R185545

Das, K., Arnold, E.

(2004) J Med Chem 47: 2550-2560

Released	2004-05-11
Method	X-RAY DIFFRACTION 3 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	REVERSE TRANSCRIPTASE (protein)
Unique Ligands	185, MG

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1SV5 \| pdb_00001sv5	Download File View File

CRYSTAL STRUCTURE OF K103N MUTANT HIV-1 REVERSE TRANSCRIPTASE (RT) IN COMPLEX WITH JANSSEN-R165335

Das, K., Arnold, E.

(2004) J Med Chem 47: 2550-2560

Released	2004-05-11
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Reverse Transcriptase (protein)
Unique Ligands	65B

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1T5D \| pdb_00001t5d	Download File View File

4-Chlorobenzoyl-CoA Ligase/Synthetase bound to 4-chlorobenzoate

Gulick, A.M., Lu, X., Dunaway-Mariano, D.

(2004) Biochemistry 43: 8670-8679

Released	2004-08-03
Method	X-RAY DIFFRACTION 2.206 Å
Organisms	Alcaligenes sp. AL3007
Macromolecule	4-chlorobenzoyl CoA ligase (protein)
Unique Ligands	174, CA

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1T5H \| pdb_00001t5h	Download File View File

4-Chlorobenzoyl-CoA Ligase/Synthetase unliganded, selenomethionine

Gulick, A.M., Lu, X., Dunaway-Mariano, D.

(2004) Biochemistry 43: 8670-8679

Released	2004-08-03
Method	X-RAY DIFFRACTION 2.002 Å
Organisms	Alcaligenes sp. AL3007
Macromolecule	4-chlorobenzoyl CoA ligase (protein)
Unique Ligands	CA

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1TVR \| pdb_00001tvr	Download File View File

HIV-1 RT/9-CL TIBO

Das, K., Ding, J., Hsiou, Y., Arnold, E.

(1996) J Mol Biology 264: 1085-1100

Released	1997-03-12
Method	X-RAY DIFFRACTION 3 Å
Organisms	Human immunodeficiency virus type 1 (CLONE 12)
Macromolecule	REVERSE TRANSCRIPTASE (protein)
Unique Ligands	TB9

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1UWB \| pdb_00001uwb	Download File View File

TYR 181 CYS HIV-1 RT/8-CL TIBO

Das, K., Ding, J., Hsiou, Y., Arnold, E.

(1996) J Mol Biology 264: 1085-1100

Released	1997-05-15
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	REVERSE TRANSCRIPTASE (protein)
Unique Ligands	TBO

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2A9G \| pdb_00002a9g	Download File View File

Structure of C406A arginine deiminase in complex with L-arginine

Galkin, A., Lu, X., Dunaway-Mariano, D., Herzberg, O.

(2005) J Biological Chem 280: 34080-34087

Released	2005-08-09
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Arginine deiminase (protein)
Unique Ligands	ARG

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2AAF \| pdb_00002aaf	Download File View File

Structure of H278A arginine deiminase with L-arginine forming a S-alkylthiouronium reaction intermediate

Galkin, A., Lu, X., Dunaway-Mariano, D., Herzberg, O.

(2005) J Biological Chem 280: 34080-34087

Released	2005-08-09
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Arginine deiminase (protein)

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2ABR \| pdb_00002abr	Download File View File

Structure of D280A arginine deiminase with L-arginine forming a S-alkylthiouronium reaction intermediate

Galkin, A., Lu, X., Dunaway-Mariano, D., Herzberg, O.

(2005) J Biological Chem 280: 34080-34087

Released	2005-08-09
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Arginine deiminase (protein)

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2ACI \| pdb_00002aci	Download File View File

Structure of D166A arginine deiminase

Galkin, A., Lu, X., Dunaway-Mariano, D., Herzberg, O.

(2005) J Biological Chem 280: 34080-34087

Released	2005-08-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Arginine deiminase (protein)

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2HMI \| pdb_00002hmi	Download File View File

HIV-1 REVERSE TRANSCRIPTASE/FRAGMENT OF FAB 28/DNA COMPLEX

Ding, J., Arnold, E.

(1998) J Mol Biology 284: 1095-1111

Released	1998-10-14
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Human immunodeficiency virus 1 Mus musculus
Macromolecule	Unique protein chains: 4 Unique nucleic acid chains: 2

1 to 25 of 361 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1BL4 | pdb_00001bl4

1BQM | pdb_00001bqm

1BQN | pdb_00001bqn

1DLO | pdb_00001dlo

1DRS | pdb_00001drs

1FBZ | pdb_00001fbz

1HNI | pdb_00001hni

1HNV | pdb_00001hnv

1HPZ | pdb_00001hpz

1IJR | pdb_00001ijr

1S6P | pdb_00001s6p

1S6Q | pdb_00001s6q

1S9E | pdb_00001s9e

1S9G | pdb_00001s9g

1SUQ | pdb_00001suq

1SV5 | pdb_00001sv5

1T5D | pdb_00001t5d

1T5H | pdb_00001t5h

1TVR | pdb_00001tvr

1UWB | pdb_00001uwb

2A9G | pdb_00002a9g

2AAF | pdb_00002aaf

2ABR | pdb_00002abr

2ACI | pdb_00002aci

2HMI | pdb_00002hmi