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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Kosma, P."

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Search Summary

This query matches 99 Structures.

Refinements

Structure Determination Methodology

experimental (99)

Scientific Name of Source Organism

	Mus musculus (66)
	Paenibacillus alvei (12)
	Homo sapiens (7)
	Burkholderia cenocepacia J2315 (5)
	Burkholderia pseudomallei K96243 (4)
	Burkholderia pseudomallei 1106a (2)
	Burkholderia orbicola AU 1054 (1)
	Escherichia coli (1)
	Pseudomonas aeruginosa (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (73)
	Bacteria (26)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (99)

Polymer Entity Type

	Protein (99)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (7)
	1.5 - 2.0 (50)
	2.0 - 2.5 (29)
	2.5 - 3.0 (12)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (5)
	2005 - 2009 (22)
	2010 - 2014 (31)
	2015 - 2019 (28)
	2020 - 2024 (13)

Enzyme Classification Name

	Transferases (5)
	Isomerases (3)

Symmetry Type

	Asymmetric (80)
	Cyclic (18)
	Dihedral (5)

SCOP Classification

	All beta proteins (62)
	Alpha and beta proteins (a+b) (5)
	Coiled coil proteins (5)
	Artifacts (3)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 99 Structures

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1Q9K \| pdb_00001q9k	Download File View File

S25-2 Fab Unliganded 1

Nguyen, H.P., Seto, N.O., MacKenzie, C.R., Brade, L., Kosma, P., Brade, H., Evans, S.V.

(2003) Nat Struct Biol 10: 1019-1025

Released	2004-01-27
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Mus musculus
Macromolecule	S25-2 Fab (IgG1k) heavy chain (protein) S25-2 Fab (IgG1k) light chain (protein)
Unique Ligands	MG

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1Q9L \| pdb_00001q9l	Download File View File

S25-2 Fab Unliganded 2

Nguyen, H.P., Seto, N.O., MacKenzie, C.R., Brade, L., Kosma, P., Brade, H., Evans, S.V.

(2003) Nat Struct Biol 10: 1019-1025

Released	2004-01-27
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Mus musculus
Macromolecule	S25-2 Fab (IgG1k) heavy chain (protein) S25-2 Fab (IgG1k) light chain (protein)
Unique Ligands	MG, ZN

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1Q9O \| pdb_00001q9o	Download File View File

S45-18 Fab Unliganded

Nguyen, H.P., Seto, N.O., MacKenzie, C.R., Brade, L., Kosma, P., Brade, H., Evans, S.V.

(2003) Nat Struct Biol 10: 1019-1025

Released	2004-01-27
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Mus musculus
Macromolecule	S45-2 Fab (IgG1k) heavy chain (protein) S45-2 Fab (IgG1k) light chain (protein)
Unique Ligands	MG

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1Q9W \| pdb_00001q9w	Download File View File

S45-18 Fab pentasaccharide bisphosphate complex

Nguyen, H.P., Seto, N.O., MacKenzie, C.R., Brade, L., Kosma, P., Brade, H., Evans, S.V.

(2003) Nat Struct Biol 10: 1019-1025

Released	2004-01-27
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Mus musculus
Macromolecule	S45-18 Fab (IgG1k) heavy chain (protein) S45-18 Fab (IgG1k) light chain (protein)
Unique Ligands	MG
Unique branched monosaccharides	GP1, GP4, KDO

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1X92 \| pdb_00001x92	Download File View File

CRYSTAL STRUCTURE OF PSEUDOMONAS AERUGINOSA PHOSPHOHEPTOSE ISOMERASE IN COMPLEX WITH REACTION PRODUCT D-GLYCERO-D-MANNOPYRANOSE-7-PHOSPHATE

Walker, J.R., Evdokimova, E., Kudritska, M., Joachimiak, A., Edwards, A., Savchenko, A., Midwest Center for Structural Genomics (MCSG)

(2008) J Biological Chem 283: 2835-2845

Released	2004-10-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	PHOSPHOHEPTOSE ISOMERASE (protein)
Unique Ligands	M7P

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2R1W \| pdb_00002r1w	Download File View File

Crystal structure of S25-2 Fab in complex with Kdo analogues

Brooks, C.L., Evans, S.V.

(2008) J Mol Biology 377: 450-468

Released	2008-12-30
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Mus musculus
Macromolecule	Fab, antibody fragment (IgG1k), heavy chain (protein) Fab, antibody fragment (IgG1k), light chain (protein)
Unique Ligands	MG, ZN
Unique branched monosaccharides	KDA, KDB

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2R1X \| pdb_00002r1x	Download File View File

Crystal structure of S25-2 Fab in complex with Kdo analogues

Brooks, C.L., Evans, S.V.

(2008) J Mol Biology 377: 450-468

Released	2008-12-30
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mus musculus
Macromolecule	Fab, antibody fragment (IgG1k), heavy chain (protein) Fab, antibody fragment (IgG1k), light chain (protein)
Unique Ligands	MG, ZN
Unique branched monosaccharides	KDA, KDD

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2R1Y \| pdb_00002r1y	Download File View File

Crystal structure of S25-2 Fab in complex with Kdo analogues

Brooks, C.L., Evans, S.V.

(2008) J Mol Biology 377: 450-468

Released	2008-12-30
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mus musculus
Macromolecule	Fab, antibody fragment (IgG1k), heavy chain (protein) Fab, antibody fragment (IgG1k), light chain (protein)
Unique Ligands	MG, ZN
Unique branched monosaccharides	KDO, KDR

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2R23 \| pdb_00002r23	Download File View File

Crystal structure of S25-2 Fab in complex with Kdo analogues

Brooks, C.L., Evans, S.V.

(2008) J Mol Biology 377: 450-468

Released	2008-12-30
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Mus musculus
Macromolecule	Fab, antibody fragment (IgG1k), heavy chain (protein) Fab, antibody fragment (IgG1k), light chain (protein)
Unique Ligands	MG, ZN
Unique branched monosaccharides	KDA, KO1

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2R2B \| pdb_00002r2b	Download File View File

Crystal structure of S25-2 Fab in complex with Kdo analogues

Brooks, C.L., Evans, S.V.

(2008) J Mol Biology 377: 450-468

Released	2008-12-30
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mus musculus
Macromolecule	Fab, antibody fragment (IgG1k), heavy chain (protein) Fab, antibody fragment (IgG1k), light chain (protein)
Unique Ligands	ZN
Unique branched monosaccharides	KDA, KDO

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2R2E \| pdb_00002r2e	Download File View File

Crystal structure of S25-2 Fab in complex with Kdo analogues

Brooks, C.L., Evans, S.V.

(2008) J Mol Biology 377: 450-468

Released	2008-12-30
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus
Macromolecule	Fab, antibody fragment (IgG1k), heavy chain (protein) Fab, antibody fragment (IgG1k), light chain (protein)
Unique Ligands	KDE

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2R2H \| pdb_00002r2h	Download File View File

Structure of S25-2 in Complex with Ko

Brooks, C.L., Evans, S.V.

(2008) J Mol Biology 377: 450-468

Released	2008-12-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	Fab, antibody fragment (IgG1k), heavy chain (protein) Fab, antibody fragment (IgG1k), light chain (protein)
Unique Ligands	KO2, MG, ZN

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2RIA \| pdb_00002ria	Download File View File

Crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein D in complex with D-glycero-D-manno-heptose

Wang, H., Head, J., Kosma, P., Sheikh, S., McDonald, B., Smith, K., Cafarella, T., Seaton, B., Crouch, E.

(2008) Biochemistry 47: 710-720

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Pulmonary surfactant-associated protein D (protein)
Unique Ligands	289, CA

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2RIB \| pdb_00002rib	Download File View File

Crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein D in complex with L-glycero-D-manno-heptose

Wang, H., Head, J., Kosma, P., Sheikh, S., McDonald, B., Smith, K., Cafarella, T., Seaton, B., Crouch, E.

(2008) Biochemistry 47: 710-720

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Pulmonary surfactant-associated protein D (protein)
Unique Ligands	CA, GMH

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2RIC \| pdb_00002ric	Download File View File

Crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein D in complex with L-glycero-D-manno-heptopyranosyl-(1-3)-L-glycero-D-manno-heptopyranose

Wang, H., Head, J., Kosma, P., Sheikh, S., McDonald, B., Smith, K., Cafarella, T., Seaton, B., Crouch, E.

(2008) Biochemistry 47: 710-720

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Pulmonary surfactant-associated protein D (protein)
Unique Ligands	CA, GMH
Unique branched monosaccharides	GMH

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2RID \| pdb_00002rid	Download File View File

Crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein D in complex with Allyl 7-O-carbamoyl-L-glycero-D-manno-heptopyranoside

Wang, H., Head, J., Kosma, P., Sheikh, S., McDonald, B., Smith, K., Cafarella, T., Seaton, B., Crouch, E.

(2008) Biochemistry 47: 710-720

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Pulmonary surfactant-associated protein D (protein)
Unique Ligands	291, CA

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2RIE \| pdb_00002rie	Download File View File

Crystal structure of the trimeric neck and carbohydrate recognition domain of human surfactant protein D in complex with 2-deoxy-L-glycero-D-manno-heptose

Wang, H., Head, J., Kosma, P., Sheikh, S., McDonald, B., Smith, K., Cafarella, T., Seaton, B., Crouch, E.

(2008) Biochemistry 47: 710-720

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Pulmonary surfactant-associated protein D (protein)
Unique Ligands	293, CA

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2XR4 \| pdb_00002xr4	Download File View File

C-terminal domain of BC2L-C Lectin from Burkholderia cenocepacia

Sulak, O., Cioci, G., Lameignere, E., Delia, M., Wimmerova, M., Imberty, A.

(2011) PLoS Pathog 7: 2238

Released	2011-08-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Burkholderia cenocepacia J2315
Macromolecule	LECTIN (protein)
Unique Ligands	SO4

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3BPC \| pdb_00003bpc	Download File View File

co-crystal structure of S25-2 Fab in complex with 5-deoxy-4-epi-2,3-dehydro Kdo (4.8) Kdo

Brooks, C.L., Evans, S.V.

(2008) J Mol Biology 377: 450-468

Released	2009-01-13
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Mus musculus
Macromolecule	Fab, antibody fragment (IgG1k), heavy chain (protein) Fab, antibody fragment (IgG1k), light chain (protein)
Unique Ligands	MG, ZN
Unique branched monosaccharides	KDA, KDB

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3DUR \| pdb_00003dur	Download File View File

Crystal structure of SAG173-04

Brooks, C.L., Blackler, R.J., Gerstenbruch, S., Kosma, P., Muller-Loennies, S., Brade, H., Evans, S.V.

(2008) Acta Crystallogr D Biol Crystallogr 64: 1250-1258

Released	2008-12-02
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Mus musculus
Macromolecule	Ig-like protein (protein) antibody Fv fragment SAG173-04 (protein)
Unique Ligands	KDO, MG, PG4

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3DUS \| pdb_00003dus	Download File View File

Crystal structure of SAG506-01, orthorhombic, twinned, crystal 1

Brooks, C.L., Blackler, R.J., Gerstenbruch, S., Kosma, P., Muller-Loennies, S., Brade, H., Evans, S.V.

(2008) Acta Crystallogr D Biol Crystallogr 64: 1250-1258

Released	2008-12-02
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Mus musculus
Macromolecule	Ig-like protein (protein) antibody Fv fragment SAG506-01 (protein)
Unique Ligands	KDO, MG, PG4

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3DUU \| pdb_00003duu	Download File View File

Crystal structure of SAG506-01, orthorhombic, twinned, crystal 2

Brooks, C.L., Blackler, R.J., Gerstenbruch, S., Kosma, P., Muller-Loennies, S., Brade, H., Evans, S.V.

(2008) Acta Crystallogr D Biol Crystallogr 64: 1250-1258

Released	2008-12-02
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Mus musculus
Macromolecule	Ig-like protein (protein) antibody Fv fragment SAG506-01 (protein)
Unique Ligands	KDO, MG, PG4

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3DV4 \| pdb_00003dv4	Download File View File

Crystal structure of SAG506-01, tetragonal, crystal 1

Brooks, C.L., Blackler, R.J., Gerstenbruch, S., Kosma, P., Muller-Loennies, S., Brade, H., Evans, S.V.

(2008) Acta Crystallogr D Biol Crystallogr 64: 1250-1258

Released	2008-12-02
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Mus musculus
Macromolecule	Ig-like protein (protein) antibody Fv fragment SAG506-01 (protein)
Unique Ligands	KDO, MG, PG4

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3DV6 \| pdb_00003dv6	Download File View File

Crystal structure of SAG506-01, tetragonal, crystal 2

Brooks, C.L., Blackler, R.J., Gerstenbruch, S., Kosma, P., Muller-Loennies, S., Brade, H., Evans, S.V.

(2008) Acta Crystallogr D Biol Crystallogr 64: 1250-1258

Released	2008-12-02
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Mus musculus
Macromolecule	Ig-like protein (protein) antibody Fv fragment SAG506-01 (protein)
Unique Ligands	KDO, MG, PG4

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3HZK \| pdb_00003hzk	Download File View File

Crystal structure of S73-2 antibody in complex with antigen Kdo(2.4)Kdo

Brooks, C.L., Muller-Loennies, S., Borisova, S.N., Brade, L., Kosma, P., Hirama, T., MacKenzie, C.R., Brade, H., Evans, S.V.

(2010) Biochemistry 49: 570-581

Released	2010-01-12
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Mus musculus
Macromolecule	S73-2 Fab (IgG1k) heavy chain (protein) S73-2 Fab (IgG1k) light chain (protein)
Unique Ligands	MG, ZN
Unique branched monosaccharides	KDA, KDO

1 to 25 of 99 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1Q9K | pdb_00001q9k

1Q9L | pdb_00001q9l

1Q9O | pdb_00001q9o

1Q9W | pdb_00001q9w

1X92 | pdb_00001x92

2R1W | pdb_00002r1w

2R1X | pdb_00002r1x

2R1Y | pdb_00002r1y

2R23 | pdb_00002r23

2R2B | pdb_00002r2b

2R2E | pdb_00002r2e

2R2H | pdb_00002r2h

2RIA | pdb_00002ria

2RIB | pdb_00002rib

2RIC | pdb_00002ric

2RID | pdb_00002rid

2RIE | pdb_00002rie

2XR4 | pdb_00002xr4

3BPC | pdb_00003bpc

3DUR | pdb_00003dur

3DUS | pdb_00003dus

3DUU | pdb_00003duu

3DV4 | pdb_00003dv4

3DV6 | pdb_00003dv6

3HZK | pdb_00003hzk