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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "James, M.N."

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Search Summary

This query matches 200 Structures.

Refinements

Structure Determination Methodology

experimental (200)

Scientific Name of Source Organism

	Homo sapiens (24)
	Streptomyces griseus (24)
	Meleagris gallopavo (23)
	Acidithiobacillus ferrooxidans ATCC 23270 (15)
	Mycobacterium tuberculosis H37Rv (14)
	Penicillium janthinellum (12)
	Arabidopsis thaliana (11)
	Mus musculus (9)
	Mycobacterium tuberculosis (9)
	Bos taurus (8)

More...

Taxonomy

	Eukaryota (109)
	Bacteria (93)
	Riboviria (15)
	Archaea (4)
	Eukaryota (eukaryotes) (2)
	Duplodnaviria (1)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (200)

Polymer Entity Type

	Protein (200)
	DNA (4)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (12)
	1.5 - 2.0 (97)
	2.0 - 2.5 (65)
	2.5 - 3.0 (21)
	3.0 - 3.5 (4)

Release Date

	1980 - 1984 (3)
	1985 - 1989 (8)
	1990 - 1994 (15)
	1995 - 1999 (29)
	2000 - 2004 (46)
	2005 - 2009 (54)
	2010 - 2014 (37)
	2015 - 2019 (8)

Enzyme Classification Name

	Hydrolases (115)
	Transferases (22)
	Oxidoreductases (20)
	Ligases (6)
	Isomerases (4)
	Lyases (4)

Membrane Protein Annotation

OPM (2)

Symmetry Type

	Asymmetric (139)
	Cyclic (81)
	Dihedral (5)
	Helical (2)
	Tetrahedral (1)

SCOP Classification

	All beta proteins (95)
	Alpha and beta proteins (a+b) (50)
	Alpha and beta proteins (a/b) (37)
	Artifacts (27)
	Small proteins (25)
	Multi-domain proteins (alpha and beta) (4)
	All alpha proteins (3)

AllSelected

1 to 25 of 200 Structures

Page 1 of 8

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1APV \| pdb_00001apv	Download File View File

CRYSTALLOGRAPHIC ANALYSIS OF TRANSITION STATE MIMICS BOUND TO PENICILLOPEPSIN: DIFLUOROSTATINE-AND DIFLUOROSTATONE-CONTAINING PEPTIDES

Sielecki, A.R., James, M.N.G.

(1992) Biochemistry 31: 3872-3886

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Penicillium janthinellum
Macromolecule	INHIBITOR ISOVALERYL (IVA)-VAL-VAL-HYDRATED DIFLUOROSTATONE-N-METHYLAMINE (protein) PENICILLOPEPSIN (protein)
Unique Ligands	DMF, MAN, SO4, XYS

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1APW \| pdb_00001apw	Download File View File

CRYSTALLOGRAPHIC ANALYSIS OF TRANSITION STATE MIMICS BOUND TO PENICILLOPEPSIN: DIFLUOROSTATINE-AND DIFLUOROSTATONE-CONTAINING PEPTIDES

Sielecki, A.R., James, M.N.G.

(1992) Biochemistry 31: 3872-3886

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Penicillium janthinellum
Macromolecule	INHIBITOR ISOVALERYL (IVA)-VAL-VAL-DIFLUOROSTATINE-N-METHYLAMINE (protein) PENICILLOPEPSIN (protein)
Unique Ligands	DMF, HSY, MAN, SO4

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1AVF \| pdb_00001avf	Download File View File

ACTIVATION INTERMEDIATE 2 OF HUMAN GASTRICSIN FROM HUMAN STOMACH

Khan, A.R., Cherney, M.M., Tarasova, N.I., James, M.N.G.

(1997) Nat Struct Biol 4: 1010-1015

Released	1998-02-25
Method	X-RAY DIFFRACTION 2.36 Å
Organisms	Homo sapiens
Macromolecule	GASTRICSIN (protein)
Unique Ligands	NA

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1AVS \| pdb_00001avs	Download File View File

X-RAY CRYSTALLOGRAPHIC STUDY OF CALCIUM-SATURATED N-TERMINAL DOMAIN OF TROPONIN C

Strynadka, N.C.J., James, M.N.G.

(1997) J Mol Biology 273: 238-255

Released	1997-12-24
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Gallus gallus
Macromolecule	TROPONIN C (protein)
Unique Ligands	CA

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1BOQ \| pdb_00001boq	Download File View File

PRO REGION C-TERMINUS: PROTEASE ACTIVE SITE INTERACTIONS ARE CRITICAL IN CATALYZING THE FOLDING OF ALPHA-LYTIC PROTEASE

Peters, R.J., Shiau, A.K., Sohl, J.L., Anderson, D.E., Tang, G., Silen, J.L., Agard, D.A.

(1998) Biochemistry 37: 12058-12067

Released	1998-08-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Lysobacter enzymogenes
Macromolecule	PROTEIN (ALPHA-LYTIC PROTEASE) (protein)
Unique Ligands	SO4

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1BXO \| pdb_00001bxo	Download File View File

ACID PROTEINASE (PENICILLOPEPSIN) (E.C.3.4.23.20) COMPLEX WITH PHOSPHONATE INHIBITOR: METHYL CYCLO[(2S)-2-[[(1R)-1-(N-(L-N-(3-METHYLBUTANOYL)VALYL-L-ASPARTYL)AMINO)-3-METHYLBUT YL] HYDROXYPHOSPHINYLOXY]-3-(3-AMINOMETHYL) PHENYLPROPANOATE

Khan, A.R., Parrish, J.C., Fraser, M.E., Smith, W.W., Bartlett, P.A., James, M.N.G.

(1998) Biochemistry 37: 16839-16845

Released	1998-10-14
Method	X-RAY DIFFRACTION 0.95 Å
Organisms	Penicillium janthinellum
Macromolecule	PROTEIN (PENICILLOPEPSIN) (protein)
Unique Ligands	GOL, MAN, PP7, SO4

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1BXQ \| pdb_00001bxq	Download File View File

ACID PROTEINASE (PENICILLOPEPSIN) COMPLEX WITH PHOSPHONATE INHIBITOR.

Parrish, J.C., Khan, A.R., Fraser, M.E., Smith, W.W., Bartlett, P.A., James, M.N.G.

(1998) Biochemistry 37: 16839-16845

Released	1998-10-14
Method	X-RAY DIFFRACTION 1.41 Å
Organisms	Penicillium janthinellum
Macromolecule	PROTEIN (PENICILLOPEPSIN) (protein)
Unique Ligands	ACT, GOL, MAN, PP8, SO4

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1CHO \| pdb_00001cho	Download File View File

CRYSTAL AND MOLECULAR STRUCTURES OF THE COMPLEX OF ALPHA-*CHYMOTRYPSIN WITH ITS INHIBITOR TURKEY OVOMUCOID THIRD DOMAIN AT 1.8 ANGSTROMS RESOLUTION

Fujinaga, M., Sielecki, A.R., Read, R.J., Ardelt, W., Laskowskijunior, M., James, M.N.G.

(1987) J Mol Biology 195: 397-418

Released	1988-07-16
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus Meleagris gallopavo
Macromolecule	ALPHA-CHYMOTRYPSIN A (protein) TURKEY OVOMUCOID THIRD DOMAIN (OMTKY3) (protein)

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1CQI \| pdb_00001cqi	Download File View File

Crystal Structure of the Complex of ADP and MG2+ with Dephosphorylated E. Coli Succinyl-CoA Synthetase

Joyce, M.A., Fraser, M.E., James, M.N.G., Bridger, W.A., Wolodko, W.T.

(2000) Biochemistry 39: 17-25

Released	2000-01-07
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (SUCCINYL-COA SYNTHETASE ALPHA CHAIN) (protein) PROTEIN (SUCCINYL-COA SYNTHETASE BETA CHAIN) (protein)
Unique Ligands	ADP, COA, MG, PO4

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1CQJ \| pdb_00001cqj	Download File View File

CRYSTAL STRUCTURE OF DEPHOSPHORYLATED E. COLI SUCCINYL-COA SYNTHETASE

Joyce, M.A., Fraser, M.E., James, M.N.G., Bridger, W.A., Wolodko, W.T.

(2000) Biochemistry 39: 17-25

Released	2000-01-10
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli
Macromolecule	SUCCINYL-COA SYNTHETASE ALPHA CHAIN (protein) SUCCINYL-COA SYNTHETASE BETA CHAIN (protein)
Unique Ligands	COA, PO4

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1CSO \| pdb_00001cso	Download File View File

CRYSTAL STRUCTURE OF THE OMTKY3 P1 VARIANT OMTKY3-ILE18I IN COMPLEX WITH SGPB

Bateman, K.S., Anderson, S., Lu, W., Qasim, M.A., Laskowski Jr., M., James, M.N.G.

(2000) Protein Sci 9: 83-94

Released	2000-01-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Meleagris gallopavo Streptomyces griseus
Macromolecule	OVOMUCOID INHIBITOR (protein) PROTEINASE B (protein)

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1CT0 \| pdb_00001ct0	Download File View File

CRYSTAL STRUCTURE OF THE OMTKY3 P1 VARIANT OMTKY3-SER18I IN COMPLEX WITH SGPB

Bateman, K.S., Anderson, S., Lu, W., Qasim, M.A., Laskowski Jr., M., James, M.N.G.

(2000) Protein Sci 9: 83-94

Released	2000-01-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Meleagris gallopavo Streptomyces griseus
Macromolecule	OVOMUCOID INHIBITOR (protein) PROTEINASE B (protein)

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1CT2 \| pdb_00001ct2	Download File View File

CRYSTAL STRUCTURE OF THE OMTKY3 P1 VARIANT OMTKY3-THR18I IN COMPLEX WITH SGPB

Bateman, K.S., Anderson, S., Lu, W., Qasim, M.A., Laskowski Jr., M., James, M.N.

(2000) Protein Sci 9: 83-94

Released	2000-01-12
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Meleagris gallopavo Streptomyces griseus
Macromolecule	OVOMUCOID INHIBITOR (protein) PROTEINASE B (protein)

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1CT4 \| pdb_00001ct4	Download File View File

CRYSTAL STRUCTURE OF THE OMTKY3 P1 VARIANT OMTKY3-VAL18I IN COMPLEX WITH SGPB

Bateman, K.S., Anderson, S., Lu, W., Qasim, M.A., Laskowski Jr., M., James, M.N.G.

(2000) Protein Sci 9: 83-94

Released	2000-01-12
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Meleagris gallopavo Streptomyces griseus
Macromolecule	OVOMUCOID INHIBITOR (protein) PROTEINASE B (protein)

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1DM0 \| pdb_00001dm0	Download File View File

SHIGA TOXIN

Fraser, M.E., Chernaia, M.M., Kozlov, Y.V., James, M.N.

(1994) Nat Struct Biol 1: 59-64

Released	1999-12-30
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Shigella dysenteriae
Macromolecule	SHIGA TOXIN A SUBUNIT (protein) SHIGA TOXIN B SUBUNIT (protein)

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1DS2 \| pdb_00001ds2	Download File View File

CRYSTAL STRUCTURE OF SGPB:OMTKY3-COO-LEU18I

Bateman, K.S., Huang, K., Anderson, S., Lu, W., Qasim, M.A., Laskowski Jr., M., James, M.N.G.

(2001) J Mol Biology 305: 839-849

Released	2001-01-31
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Meleagris gallopavo Streptomyces griseus
Macromolecule	OVOMUCOID (protein) PROTEINASE B (SGPB) (protein)

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1DS3 \| pdb_00001ds3	Download File View File

CRYSTAL STRUCTURE OF OMTKY3-CH2-ASP19I

Bateman, K.S., Huang, K., Anderson, S., Lu, W., Qasim, M.A., Laskowski Jr., M., James, M.N.G.

(2001) J Mol Biology 305: 839-849

Released	2001-01-31
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Meleagris gallopavo
Macromolecule	OVOMUCOID (protein)

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1EAI \| pdb_00001eai	Download File View File

COMPLEX OF ASCARIS CHYMOTRPSIN/ELASTASE INHIBITOR WITH PORCINE ELASTASE

Huang, K., Strynadka, N.C.J., Bernard, V.D., Peanasky, R.J., James, M.N.G.

(1994) Structure 2: 679-689

Released	1999-04-05
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Ascaris suum Sus scrofa
Macromolecule	PROTEIN (CHYMOTRYPSIN/ELASTASE ISOINHIBITOR 1) (protein) PROTEIN (ELASTASE) (protein)

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1EUC \| pdb_00001euc	Download File View File

CRYSTAL STRUCTURE OF DEPHOSPHORYLATED PIG HEART, GTP-SPECIFIC SUCCINYL-COA SYNTHETASE

Fraser, M.E., James, M.N.G., Bridger, W.A., Wolodko, W.T.

(2000) J Mol Biology 299: 1325-1339

Released	2000-07-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Sus scrofa
Macromolecule	SUCCINYL-COA SYNTHETASE, ALPHA CHAIN (protein) SUCCINYL-COA SYNTHETASE, BETA CHAIN (protein)
Unique Ligands	PO4, SO4, ZN

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1EUD \| pdb_00001eud	Download File View File

CRYSTAL STRUCTURE OF PHOSPHORYLATED PIG HEART, GTP-SPECIFIC SUCCINYL-COA SYNTHETASE

Fraser, M.E., James, M.N.G., Bridger, W.A., Wolodko, W.T.

(2000) J Mol Biology 299: 1325-1339

Released	2000-07-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Sus scrofa
Macromolecule	SUCCINYL-COA SYNTHETASE, ALPHA CHAIN (protein) SUCCINYL-COA SYNTHETASE, BETA CHAIN (protein)
Unique Ligands	SO4

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1F32 \| pdb_00001f32	Download File View File

CRYSTAL STRUCTURE OF ASCARIS PEPSIN INHIBITOR-3

Ng, K.K., Petersen, J.F., Cherney, M.M., Garen, C., James, M.N.

(2000) Nat Struct Biol 7: 653-657

Released	2001-02-01
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Ascaris suum
Macromolecule	MAJOR PEPSIN INHIBITOR PI-3 (protein)

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1F34 \| pdb_00001f34	Download File View File

CRYSTAL STRUCTURE OF ASCARIS PEPSIN INHIBITOR-3 BOUND TO PORCINE PEPSIN

Ng, K.K., Petersen, J.F., Cherney, M.M., Garen, C., James, M.N.

(2000) Nat Struct Biol 7: 653-657

Released	2001-02-01
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Ascaris suum Sus scrofa
Macromolecule	MAJOR PEPSIN INHIBITOR PI-3 (protein) PEPSIN A (protein)
Unique Ligands	MPD