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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Hasegawa, T."

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Search Summary

This query matches 53 Structures.

Refinements

Structure Determination Methodology

experimental (53)

Scientific Name of Source Organism

	Tokunagayusurika akamusi (10)
	Streptomyces olivaceoviridis (7)
	Lumbricus terrestris (6)
	Homo sapiens (4)
	Lamellibrachia satsuma (4)
	Aldabrachelys gigantea (3)
	Aeropyrum pernix (2)
	Bos taurus (2)
	Gallus gallus (2)
	Podocnemis unifilis (2)

More...

Taxonomy

	Eukaryota (37)
	Bacteria (12)
	Archaea (4)

Experimental Method

	X-RAY DIFFRACTION (51)
	ELECTRON CRYSTALLOGRAPHY (1)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (53)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.5 - 2.0 (27)
	2.0 - 2.5 (18)
	2.5 - 3.0 (5)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (8)
	2005 - 2009 (21)
	2010 - 2014 (17)
	2015 - 2019 (4)
	2020 - 2024 (2)
	2025 - 2029 (1)

Enzyme Classification Name

	Hydrolases (16)
	Transferases (4)
	Oxidoreductases (3)
	Ligases (2)

Membrane Protein Annotation

	MemProtMD (1)
	OPM (1)
	PDBTM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (32)
	Cyclic (16)
	Dihedral (8)

SCOP Classification

	All alpha proteins (20)
	All beta proteins (20)
	Alpha and beta proteins (a/b) (10)
	Alpha and beta proteins (a+b) (6)
	Membrane and cell surface proteins and peptides (1)
	Artifacts (1)

AllSelected

1 to 25 of 53 Structures

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1ERZ \| pdb_00001erz	Download File View File

CRYSTAL STRUCTURE OF N-CARBAMYL-D-AMINO ACID AMIDOHYDROLASE WITH A NOVEL CATALYTIC FRAMEWORK COMMON TO AMIDOHYDROLASES

Nakai, T., Hasegawa, T., Yamashita, E., Yamamoto, M., Kumasaka, T., Ueki, T., Nanba, H., Ikenaka, Y., Takahashi, S., Sato, M., Tsukihara, T.

(2000) Structure 8: 729-737

Released	2001-04-06
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Agrobacterium sp. KNK712
Macromolecule	N-CARBAMYL-D-AMINO ACID AMIDOHYDROLASE (protein)

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1IZ9 \| pdb_00001iz9	Download File View File

Crystal Structure of Malate Dehydrogenase from Thermus thermophilus HB8

Hirose, R., Hasegawa, T., Yamano, A., Kuramitsu, S., Hamada, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2002-10-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermus thermophilus
Macromolecule	MALATE DEHYDROGENASE (protein)

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1J1B \| pdb_00001j1b	Download File View File

Binary complex structure of human tau protein kinase I with AMPPNP

Aoki, M., Yokota, T., Sugiura, I., Sasaki, C., Hasegawa, T., Okumura, C., Kohno, T., Sugio, S., Matsuzaki, T.

(2004) Acta Crystallogr D Biol Crystallogr 60: 439-446

Released	2003-12-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Glycogen synthase kinase-3 beta (protein)
Unique Ligands	ANP

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1J1C \| pdb_00001j1c	Download File View File

Binary complex structure of human tau protein kinase I with ADP

Aoki, M., Yokota, T., Sugiura, I., Sasaki, C., Hasegawa, T., Okumura, C., Kohno, T., Sugio, S., Matsuzaki, T.

(2004) Acta Crystallogr D Biol Crystallogr 60: 439-446

Released	2003-12-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Glycogen synthase kinase-3 beta (protein)
Unique Ligands	ADP, MG

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1J1J \| pdb_00001j1j	Download File View File

Crystal Structure of human Translin

Sugiura, I., Sasaki, C., Hasegawa, T., Kohno, T., Sugio, S., Moriyama, H., Kasai, M., Matsuzaki, T.

(2004) Acta Crystallogr D Biol Crystallogr 60: 674-679

Released	2003-12-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Translin (protein)

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1V75 \| pdb_00001v75	Download File View File

Crystal structure of hemoglobin D from the Aldabra giant tortoise (Geochelone gigantea) at 2.0 A resolution

Kuwada, T., Hasegawa, T., Satoh, I., Ishikawa, K., Shishikura, F.

(2003) Protein Pept Lett 10: 422-425

Released	2003-12-30
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Aldabrachelys gigantea
Macromolecule	Hemoglobin A and D beta chain (protein) Hemoglobin D alpha chain (protein)
Unique Ligands	HEM

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1WCZ \| pdb_00001wcz	Download File View File

Crystal structure of an alkaline form of v8 protease from Staphylococcus aureus

Yamada, K., Ohta, M., Hasegawa, T., Torii, K., Murakami, M., Kouyama, K.

To be published

Released	2004-06-01
Method	X-RAY DIFFRACTION 2 Å
Organisms	Staphylococcus aureus
Macromolecule	Glutamyl endopeptidase (protein)
Unique Ligands	ZN

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1WMU \| pdb_00001wmu	Download File View File

Crystal Structure of Hemoglobin D from the Aldabra Giant Tortoise, Geochelone gigantea, at 1.65 A resolution

Kuwada, T., Hasegawa, T., Satoh, I., Ishikawa, K., Shishikura, F.

To be published

Released	2004-08-03
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Aldabrachelys gigantea
Macromolecule	Hemoglobin A and D beta chain (protein) Hemoglobin D alpha chain (protein)
Unique Ligands	HEM

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1X3K \| pdb_00001x3k	Download File View File

Crystal structure of a hemoglobin component (TA-V) from Tokunagayusurika akamusi

Kuwada, T., Hasegawa, T., Sato, S., Sato, I., Ishikawa, K., Takagi, T., Shishikura, F.

(2007) Gene 398: 29-34

Released	2005-05-24
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Tokunagayusurika akamusi
Macromolecule	hemoglobin component V (protein)
Unique Ligands	HEM

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1X46 \| pdb_00001x46	Download File View File

Crystal structure of a hemoglobin component (TA-VII) from Tokunagayusurika akamusi

Kuwada, T., Hasegawa, T., Sato, S., Sato, I., Ishikawa, K., Takagi, T., Shishikura, F.

(2007) Gene 398: 29-34

Released	2005-05-24
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Tokunagayusurika akamusi
Macromolecule	hemoglobin component VII (protein)
Unique Ligands	HEM

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2D1Z \| pdb_00002d1z	Download File View File

Crystal structure of catalytic-site mutant xylanase from Streptomyces olivaceoviridis E-86

Suzuki, R., Kuno, A., Fujimoto, Z., Ito, S., Kawahara, S.I., Kaneko, S., Hasegawa, T., Taira, K.

(2009) J Biochem 146: 61-70

Released	2006-10-10
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	ENDO-1,4-BETA-D-XYLANASE (protein)
Unique Ligands	GOL, SO4

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2D20 \| pdb_00002d20	Download File View File

Crystal structure of michaelis complex of catalytic-site mutant xylanase from Streptomyces olivaceoviridis E-86

Suzuki, R., Kuno, A., Fujimoto, Z., Ito, S., Kawahara, S.I., Kaneko, S., Hasegawa, T., Taira, K.

(2009) J Biochem 146: 61-70

Released	2006-10-10
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	ENDO-1,4-BETA-D-XYLANASE (protein)
Unique Ligands	GOL, NPO
Unique branched monosaccharides	XYS

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2D22 \| pdb_00002d22	Download File View File

Crystal structure of covalent glycosyl-enzyme intermediate of catalytic-site mutant xylanase from Streptomyces olivaceoviridis E-86

Suzuki, R., Kuno, A., Fujimoto, Z., Ito, S., Kawahara, S.I., Kaneko, S., Hasegawa, T., Taira, K.

(2009) J Biochem 146: 61-70

Released	2006-10-10
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	ENDO-1,4-BETA-D-XYLANASE (protein)
Unique Ligands	GOL, SO4
Unique branched monosaccharides	XYS

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2D23 \| pdb_00002d23	Download File View File

Crystal structure of EP complex of catalytic-site mutant xylanase from Streptomyces olivaceoviridis E-86

Suzuki, R., Kuno, A., Fujimoto, Z., Ito, S., Kawahara, S.I., Kaneko, S., Hasegawa, T., Taira, K.

(2009) J Biochem 146: 61-70

Released	2006-10-10
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	ENDO-1,4-BETA-D-XYLANASE (protein)
Unique Ligands	AZI, GOL
Unique branched monosaccharides	XYS

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2D24 \| pdb_00002d24	Download File View File

Crystal structure of ES complex of catalytic-site mutant xylanase from Streptomyces olivaceoviridis E-86

Suzuki, R., Kuno, A., Fujimoto, Z., Ito, S., Kawahara, S.I., Kaneko, S., Hasegawa, T., Taira, K.

(2009) J Biochem 146: 61-70

Released	2006-10-10
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	ENDO-1,4-BETA-D-XYLANASE (protein)
Unique Ligands	GOL, SO4
Unique branched monosaccharides	XYS

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2D8O \| pdb_00002d8o	Download File View File

Structure of VIL-thaumatin

Miyatake, H., Hasegawa, T., Yamano, A.

(2006) Acta Crystallogr D Biol Crystallogr 62: 280-289

Released	2006-07-11
Method	X-RAY DIFFRACTION 2.38 Å
Organisms	Thaumatococcus daniellii
Macromolecule	Thaumatin I (protein)
Unique Ligands	IOD

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2D8P \| pdb_00002d8p	Download File View File

Structure of HYPER-VIL-thaumatin

Miyatake, H., Hasegawa, T., Yamano, A.

(2006) Acta Crystallogr D Biol Crystallogr 62: 280-289

Released	2006-07-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thaumatococcus daniellii
Macromolecule	Thaumatin I (protein)
Unique Ligands	IOD

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2D8W \| pdb_00002d8w	Download File View File

Structure of HYPER-VIL-trypsin

Miyatake, H., Hasegawa, T., Yamano, A.

(2006) Acta Crystallogr D Biol Crystallogr 62: 280-289

Released	2006-07-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus
Macromolecule	Cationic trypsin (protein)
Unique Ligands	CA, IOD

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2D91 \| pdb_00002d91	Download File View File

Structure of HYPER-VIL-lysozyme

Miyatake, H., Hasegawa, T., Yamano, A.

(2006) Acta Crystallogr D Biol Crystallogr 62: 280-289

Released	2006-07-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)
Unique Ligands	IOD

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2D97 \| pdb_00002d97	Download File View File

Structure of VIL-xylanase

Miyatake, H., Hasegawa, T., Yamano, A.

(2006) Acta Crystallogr D Biol Crystallogr 62: 280-289

Released	2006-07-11
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Trichoderma reesei
Macromolecule	Endo-1,4-beta-xylanase 2 (protein)

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2D98 \| pdb_00002d98	Download File View File

Structure of VIL (extra KI/I2 added)-xylanase

Miyatake, H., Hasegawa, T., Yamano, A.

(2006) Acta Crystallogr D Biol Crystallogr 62: 280-289

Released	2006-07-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Trichoderma reesei
Macromolecule	Endo-1,4-beta-xylanase 2 (protein)
Unique Ligands	IOD

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2DPH \| pdb_00002dph	Download File View File

Crystal Structure of Formaldehyde dismutase

Hasegawa, T., Yamano, A., Yanase, H.

(2002) Acta Crystallogr A 58: C102-C102

Released	2007-05-29
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Pseudomonas putida
Macromolecule	Formaldehyde dismutase (protein)
Unique Ligands	NAD, ZN

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2DRY \| pdb_00002dry	Download File View File

Crystal structure of the earthworm lectin C-terminal domain mutant

Suzuki, R., Fujimoto, Z.

(2007) J Biochem 141: 389-399

Released	2007-02-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Lumbricus terrestris
Macromolecule	29-kDa galactose-binding lectin (protein)
Unique Ligands	PGE, SO4

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2DRZ \| pdb_00002drz	Download File View File

Crystal structure of the earthworm lectin C-terminal domain mutant in complex with lactose

Suzuki, R., Fujimoto, Z.

(2007) J Biochem 141: 389-399

Released	2007-02-06
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Lumbricus terrestris
Macromolecule	29-kDa galactose-binding lectin (protein)
Unique Ligands	SO4
Unique branched monosaccharides	BGC, GAL

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2DS0 \| pdb_00002ds0	Download File View File

Crystal structure of the earthworm lectin C-terminal domain mutant in complex with 6'-sialyllactose

Suzuki, R., Fujimoto, Z.

(2007) J Biochem 141: 389-399

Released	2007-02-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Lumbricus terrestris
Macromolecule	29-kDa galactose-binding lectin (protein)
Unique Ligands	SO4
Unique branched monosaccharides	BGC, GAL, SIA

1 to 25 of 53 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1ERZ | pdb_00001erz

1IZ9 | pdb_00001iz9

1J1B | pdb_00001j1b

1J1C | pdb_00001j1c

1J1J | pdb_00001j1j

1V75 | pdb_00001v75

1WCZ | pdb_00001wcz

1WMU | pdb_00001wmu

1X3K | pdb_00001x3k

1X46 | pdb_00001x46

2D1Z | pdb_00002d1z

2D20 | pdb_00002d20

2D22 | pdb_00002d22

2D23 | pdb_00002d23

2D24 | pdb_00002d24

2D8O | pdb_00002d8o

2D8P | pdb_00002d8p

2D8W | pdb_00002d8w

2D91 | pdb_00002d91

2D97 | pdb_00002d97

2D98 | pdb_00002d98

2DPH | pdb_00002dph

2DRY | pdb_00002dry

2DRZ | pdb_00002drz

2DS0 | pdb_00002ds0