RCSB PDB: Search

3QUK \| pdb_00003quk	Download File View File

Crystal structures of the murine class I major histocompatibility complex H-2Db in complex with LCMV-derived gp33 altered peptide ligand (Y4A)

Allerbring, E., Duru, A.D., Uchtenhagen, H., Madhurantakam, C., Grimm, S., Tomek, M.B., Mazumdar, P.A., Spetz, A., Friemann, R., Sandalova, T., Uhlin, M., Nygren, P., Achour, A.

(2012) Eur J Immunol 42: 2990-3000

Released	2012-03-21
Method	X-RAY DIFFRACTION 2.41 Å
Organisms	Lymphocytic choriomeningitis virus (strain WE) Mus musculus
Macromolecule	Beta-2-microglobulin (protein) H-2 class I histocompatibility antigen, D-B alpha chain (protein) Pre-glycoprotein polyprotein GP complex (protein)

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3QUL \| pdb_00003qul	Download File View File

Crystal structures of the murine class I major histocompatibility complex H-2Db in complex with LCMV-derived gp33 altered peptide ligand (Y4S)

Allerbring, E., Duru, A.D., Uchtenhagen, H., Madhurantakam, C., Grimm, S., Tomek, M.B., Mazumdar, P.A., Spetz, A., Friemann, R., Sandalova, T., Uhlin, M., Nygren, P., Achour, A.

(2012) Eur J Immunol 42: 2990-3000

Released	2012-03-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Lymphocytic choriomeningitis virus (strain WE) Mus musculus
Macromolecule	Beta-2-microglobulin (protein) H-2 class I histocompatibility antigen, D-B alpha chain (protein) Pre-glycoprotein polyprotein GP complex (protein)

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3ROL \| pdb_00003rol	Download File View File

Murine class I major histocompatibility complex H-2Kb in complex with post-translationally modified LCMV-derived gp34-41 peptide, comprising a nitrotyrosine at position 3

Madhurantakam, C., Duru, A.D., Leong, C., Sandalova, T., Webb, J.R., Achour, A.

(2012) PLoS One

Released	2012-04-04
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mammarenavirus choriomeningitidis Mus musculus
Macromolecule	Beta-2-microglobulin (protein) H-2 class I histocompatibility antigen, K-B alpha chain (protein) Pre-glycoprotein polyprotein GP complex (protein)
Unique Ligands	GOL, MPD, PO4

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3ROO \| pdb_00003roo	Download File View File

Murine class I major histocompatibility complex H-2Kb in complex with immunodominant LCMV-derived gp34-41 peptide

Madhurantakam, C., Duru, A.D., Leong, C., Sandalova, T., Webb, J.R., Achour, A.

(2012) PLoS One

Released	2012-04-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mammarenavirus choriomeningitidis Mus musculus
Macromolecule	Beta-2-microglobulin (protein) H-2 class I histocompatibility antigen, K-B alpha chain (protein) Pre-glycoprotein polyprotein GP complex (protein)
Unique Ligands	GOL, MPD, PO4

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3TBS \| pdb_00003tbs	Download File View File

CRYSTAL STRUCTURE OF THE MURINE CLASS I MAJOR HISTOCOMPATIBILITY COMPLEX H-2DB IN COMPLEX THE WITH LCMV-DERIVED GP33 ALTERED PEPTIDE ligand (V3P,Y4A)

Duru, A.D., Allerbring, E.B., Uchtenhagen, H., Mazumdar, P.A., Badia-Martinez, D., Madhurantakam, C., Sandalova, T., Nygren, P., Achour, A.

To be published

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Lymphocytic choriomeningitis virus (strain WE) Mus musculus
Macromolecule	Beta-2-microglobulin (protein) GLYCOPROTEIN G1 (protein) H-2 class I histocompatibility antigen, D-B alpha chain (protein)
Unique Ligands	GOL, SO4

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3TBT \| pdb_00003tbt	Download File View File

CRYSTAL STRUCTURE OF THE MURINE CLASS I MAJOR HISTOCOMPATIBILITY COMPLEX H-2DB IN COMPLEX WITH THE LCMV-DERIVED GP33 ALTERED PEPTIDE ligand (V3P, Y4S)

Duru, A.D., Allerbring, E.B., Uchtenhagen, H., Mazumdar, P.A., Badia-Martinez, D., Madhurantakam, C., Sandalova, T., Nygren, P., Achour, A.

To be published

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Lymphocytic choriomeningitis virus (strain WE) Mus musculus
Macromolecule	Beta-2-microglobulin (protein) GLYCOPROTEIN G1 (protein) H-2 class I histocompatibility antigen, D-B alpha chain (protein)

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3TBV \| pdb_00003tbv	Download File View File

CRYSTAL STRUCTURE OF THE MURINE CLASS I MAJOR HISTOCOMPATIBILITY COMPLEX H-2DB IN COMPLEX WITH THE LCMV-DERIVED GP33 ALTERED PEPTIDE ligand (A2G,V3P,Y4A)

Duru, A.D., Allerbring, E.B., Uchtenhagen, H., Mazumdar, P.A., Badia-Martinez, D., Madhurantakam, C., Sandalova, T., Nygren, P., Achour, A.

To be published

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Lymphocytic choriomeningitis virus (strain WE) Mus musculus
Macromolecule	Beta-2-microglobulin (protein) Glycoprotein G1 (protein) H-2 class I histocompatibility antigen, D-B alpha chain (protein)
Unique Ligands	GOL, SO4

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3TBW \| pdb_00003tbw	Download File View File

CRYSTAL STRUCTURE OF THE MURINE CLASS I MAJOR HISTOCOMPATIBILITY COMPLEX H-2DB IN COMPLEX WITH THE LCMV-DERIVED GP33 ALTERED PEPTIDE ligand (A2G, V3P, Y4S)

Duru, A.D., Allerbring, E.B., Uchtenhagen, H., Mazumdar, P.A., Badia-Martinez, D., Madhurantakam, C., Sandalova, T., Nygren, P., Achour, A.

To be published

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Lymphocytic choriomeningitis virus (strain WE) Mus musculus
Macromolecule	Beta-2-microglobulin (protein) GLYCOPROTEIN GPC (protein) H-2 class I histocompatibility antigen, D-B alpha chain (protein)

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3TBY \| pdb_00003tby	Download File View File

CRYSTAL STRUCTURE OF THE MURINE CLASS I MAJOR HISTOCOMPATIBILITY COMPLEX H-2DB IN COMPLEX WITH THE LCMV-DERIVED GP33 ALTERED PEPTIDE ligand (V3P, Y4F)

Duru, A.D., Allerbring, E.B., Uchtenhagen, H., Mazumdar, P.A., Badia-Martinez, D., Madhurantakam, C., Sandalova, T., Nygren, P., Achour, A.

To be published

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Lymphocytic choriomeningitis virus (strain WE) Mus musculus
Macromolecule	Beta-2-microglobulin (protein) GLYCOPROTEIN GPC (protein) H-2 class I histocompatibility antigen, D-B alpha chain (protein)

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4NSK \| pdb_00004nsk	Download File View File

CRYSTAL STRUCTURE OF THE MURINE CLASS I MAJOR HISTOCOMPATIBILITY COMPLEX H-2DB IN COMPLEX WITH LCMV-DERIVED GP33 ALTERED PEPTIDE ligand V3P

Allerbring, E.B., Duru, A.D., Uchtenhagen, H., Mazumdar, P.A., Badia-Martinez, D., Madhurantakam, C., Sandalova, T., Nygren, P., Achour, A.

To be published

Released	2014-01-01
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mus musculus
Macromolecule	Beta-2-microglobulin (protein) H-2 class I histocompatibility antigen, D-B alpha chain (protein) Pre-glycoprotein polyprotein GP (protein)

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5E8N \| pdb_00005e8n	Download File View File

The structure of the TEIPP associated Trh4 peptide in complex with H-2D(b)

Hafstrand, I., Doorduijn, E., Duru, A.D., Buratto, J., Oliveira, C.C., Sandalova, T., van Hall, T., Achour, A.

(2016) J Immunol 196: 2327-2334

Released	2016-02-03
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Mus musculus
Macromolecule	Beta-2-microglobulin (protein) Ceramide synthase 5 (protein) H-2 class I histocompatibility antigen, D-B alpha chain (protein)
Unique Ligands	GOL, SO4

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5E8O \| pdb_00005e8o	Download File View File

The structure of the TEIPP associated altered peptide ligand Trh4-p2ABU in complex with H-2D(b)

Hafstrand, I., Doorduijn, E., Duru, A.D., Buratto, J., Oliveira, C.C., Sandalova, T., van Hall, T., Achour, A.

(2016) J Immunol 196: 2327-2334

Released	2016-02-03
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Mus musculus
Macromolecule	Beta-2-microglobulin (protein) Ceramide synthase 5 (protein) H-2 class I histocompatibility antigen, D-B alpha chain (protein)

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5E8P \| pdb_00005e8p	Download File View File

The structure of the TEIPP associated altered peptide ligand Trh4-p5NLE in complex with H-2D(b)

Hafstrand, I., Doorduijn, E., Duru, A.D., Buratto, J., Oliveira, C.C., Sandalova, T., van Hall, T., Achour, A.

(2016) J Immunol 196: 2327-2334

Released	2016-02-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	Beta-2-microglobulin (protein) Ceramide synthase 5 (protein) H-2 class I histocompatibility antigen, D-B alpha chain (protein)
Unique Ligands	SO4

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5JWD \| pdb_00005jwd	Download File View File

Crystal structure of H-2Db in complex with the LCMV-derived GP392-401 peptide

Buratto, J., Badia-Martinez, D., Norstrom, M., Sandalova, T., Achour, A.

(2017) PLoS One 12: e0189584-e0189584

Released	2017-05-24
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Lymphocytic choriomeningitis virus (strain Armstrong) Mus musculus
Macromolecule	Beta-2-microglobulin (protein) H-2 class I histocompatibility antigen, D-B alpha chain (protein) Pre-glycoprotein polyprotein GP complex (protein)
Unique Ligands	GOL, SO4

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5JWE \| pdb_00005jwe	Download File View File

Crystal structure of H-2Db in complex with the LCMV-derived GP92-101 peptide

Buratto, J., Badia-Martinez, D., Norstrom, M., Sandalova, T., Achour, A.

(2017) PLoS One 12: e0189584-e0189584

Released	2017-05-24
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Lymphocytic choriomeningitis virus (strain Armstrong) Mus musculus
Macromolecule	Beta-2-microglobulin (protein) H-2 class I histocompatibility antigen, D-B alpha chain (protein) Pre-glycoprotein polyprotein GP complex (protein)
Unique Ligands	GOL, SO4

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5MZM \| pdb_00005mzm	Download File View File

Structure of H-2Db in complex with TEIPP APL Trh4 p3P

Hafstrand, I., Achour, A., Sandalova, T.

(2018) J Immunol 200: 2860-2868

Released	2018-03-21
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus
Macromolecule	Beta-2-microglobulin (protein) Ceramide synthase 5 derived peptide Trh4 p3P (protein) H-2 class I histocompatibility antigen, D-B alpha chain (protein)
Unique Ligands	GOL, SO4

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5TIL \| pdb_00005til	Download File View File

Murine class I major histocompatibility complex H-2 Db in complex with LCMV-derived GP33 altered peptide V3P and T-cell receptor P14

Achour, A., Sandalova, T., Allerbring, E.B.

To be published

Released	2017-11-01
Method	X-RAY DIFFRACTION 2.83 Å
Organisms	Mammarenavirus choriomeningitidis Mus musculus
Macromolecule	Unique protein chains: 6

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5TJE \| pdb_00005tje	Download File View File

Murine class I major histocompatibility complex H-2Db in complex with LCMV-derived gp33 and T cell receptor P14

Achour, A., Sandalova, T., Allerbring, E., Popov, A.

To be published

Released	2017-11-01
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Mammarenavirus choriomeningitidis Mus musculus
Macromolecule	ALPHA CHAIN OF MURINE T CELL RECEPTOR p14 (protein) BETA CHAIN OF MURINE T CELL RECEPTOR p14 (protein) Beta-2-microglobulin (protein) H-2 class I histocompatibility antigen, D-B alpha chain (protein) Peptide gp33-41 from LCMV (protein)

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6G9Q \| pdb_00006g9q	Download File View File

Ternary complex of P14 TCR with murine MHC class I H-2 Db in complex with self-antigen derived from dopamine monooxygenase.

Achour, A., Sandalova, T., Allerbring, E.

To be published

Released	2019-04-24
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Mus musculus
Macromolecule	Beta-2-microglobulin (protein) Dopamine beta-hydroxylase (protein) H-2 class I histocompatibility antigen, D-B alpha chain (protein) T cell receptor alpha variable 14-1,T-cell receptor alpha chain C region (protein) T-cell receptor beta chain V region C5,T-cell receptor beta-1 chain C region (protein)
Unique Ligands	GOL

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6G9R \| pdb_00006g9r	Download File View File

Murine class I major histocompatibility complex H-2 Db in complex with self-antigen derived from dopamine monooxygenase.

Achour, A., Sandalova, T., Allerbring, E.

To be published

Released	2019-04-24
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Mus musculus
Macromolecule	Beta-2-microglobulin (protein) Dopamine beta-hydroxylase (protein) H-2 class I histocompatibility antigen, D-B alpha chain (protein)

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6GB5 \| pdb_00006gb5	Download File View File

Structure of H-2Db with truncated SEV peptide and GL

Hafstrand, I., Sandalova, T., Achour, A.

(2019) Proc Natl Acad Sci U S A 116: 5055-5060

Released	2019-03-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mus musculus Respirovirus muris
Macromolecule	Beta-2-microglobulin (protein) GLY-LEU (protein) H-2 class I histocompatibility antigen, D-B alpha chain (protein) PHE-ALA-PRO-GLY-ASN-TYR-PRO (protein)
Unique Ligands	GOL, SO4

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6GB6 \| pdb_00006gb6	Download File View File

Structure of H-2Kb with dipeptide GL

Hafstrand, I., Sandalova, T., Achour, A.

(2019) Proc Natl Acad Sci U S A 116: 5055-5060

Released	2019-03-06
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Mus musculus
Macromolecule	Beta-2-microglobulin (protein) H-2 class I histocompatibility antigen, K-B alpha chain (protein)
Unique Ligands	GLY, GOL, LEU

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6GB7 \| pdb_00006gb7	Download File View File

Structure of H-2Db with scoop loop from tapasin

Hafstrand, I., Sandalova, T., Achour, A.

(2019) Proc Natl Acad Sci U S A 116: 5055-5060

Released	2019-03-06
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Mus musculus Respirovirus muris
Macromolecule	Beta-2-microglobulin (protein) GLY-GLY-LEU-SER (protein) H-2 class I histocompatibility antigen, D-B alpha chain (protein) PHE-ALA-PRO-GLY-ASN-TYR-PRO (protein)
Unique Ligands	GOL, SO4

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3QUK | pdb_00003quk

3QUL | pdb_00003qul

3ROL | pdb_00003rol

3ROO | pdb_00003roo

3TBS | pdb_00003tbs

3TBT | pdb_00003tbt

3TBV | pdb_00003tbv

3TBW | pdb_00003tbw

3TBY | pdb_00003tby

4NSK | pdb_00004nsk

5E8N | pdb_00005e8n

5E8O | pdb_00005e8o

5E8P | pdb_00005e8p

5JWD | pdb_00005jwd

5JWE | pdb_00005jwe

5MZM | pdb_00005mzm

5TIL | pdb_00005til

5TJE | pdb_00005tje

6G9Q | pdb_00006g9q

6G9R | pdb_00006g9r

6GB5 | pdb_00006gb5

6GB6 | pdb_00006gb6

6GB7 | pdb_00006gb7