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234,785 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Czarny, A."

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Search Summary

This query matches 26 Structures.

Refinements

Structure Determination Methodology

experimental (26)

Scientific Name of Source Organism

	Homo sapiens (6)
	synthetic construct (1)

Taxonomy

	Eukaryota (6)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (26)

Polymer Entity Type

	DNA (25)
	Protein (6)

Refinement Resolution (Å)

	1.5 - 2.0 (11)
	2.0 - 2.5 (6)
	2.5 - 3.0 (9)

Release Date

	1985 - 1989 (1)
	1990 - 1994 (8)
	1995 - 1999 (3)
	2000 - 2004 (2)
	2005 - 2009 (6)
	2010 - 2014 (5)
	2020 - 2024 (1)

Symmetry Type

	Cyclic (6)
	Asymmetric (1)

SCOP Classification

All beta proteins (6)

AllSelected

1 to 25 of 26 Structures

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113D \| pdb_0000113d	Download File View File

THE STRUCTURE OF GUANOSINE-THYMIDINE MISMATCHES IN B-DNA AT 2.5 ANGSTROMS RESOLUTION

Hunter, W.N., Brown, T., Kneale, G., Anand, N.N., Rabinovich, D., Kennard, O.

(1987) J Biological Chem 262: 9962-9970

Released	1993-07-15
Method	X-RAY DIFFRACTION 2.5 Å
Macromolecule	DNA (5'-D(CPGPCPGPAPAPTPTPTPGPCPG)-3') (nucleic acid)

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115D \| pdb_0000115d	Download File View File

ORDERED WATER STRUCTURE IN AN A-DNA OCTAMER AT 1.7 ANGSTROMS RESOLUTION

Kennard, O., Cruse, W.B.T., Nachman, J., Prange, T., Shakked, Z., Rabinovich, D.

(1986) J Biomol Struct Dyn 3: 623-647

Released	1993-07-15
Method	X-RAY DIFFRACTION 1.7 Å
Macromolecule	DNA (5'-D(GPGP(BRU)PAP(BRU)PAPCPC)-3') (nucleic acid)

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1D31 \| pdb_00001d31	Download File View File

THE THREE-DIMENSIONAL STRUCTURES OF BULGE-CONTAINING DNA FRAGMENTS

Joshua-Tor, L., Frolow, F., Appella, E., Hope, H., Rabinovich, D., Sussman, J.L.

(1992) J Mol Biology 225: 397-431

Released	1992-04-15
Method	X-RAY DIFFRACTION 2.6 Å
Macromolecule	DNA (5'-D(CPGPCPAPGPAPAPTPTPCPGPCP*G)-3') (nucleic acid)

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1D32 \| pdb_00001d32	Download File View File

DRUG-INDUCED DNA REPAIR: X-RAY STRUCTURE OF A DNA-DITERCALINIUM COMPLEX

Gao, Q., Williams, L.D., Egli, M., Rabinovich, D., Chen, S.-L., Quigley, G.J., Rich, A.

(1991) Proc Natl Acad Sci U S A 88: 2422-2426

Released	1992-04-15
Method	X-RAY DIFFRACTION 1.7 Å
Macromolecule	DNA (5'-D(CPGPCPG)-3') (nucleic acid)
Unique Ligands	DIT

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1D91 \| pdb_00001d91	Download File View File

G.T BASE PAIRS IN A DNA HELIX. THE CRYSTAL STRUCTURE OF D(G-G-G-G-T-C-C-C)

Kneale, G., Brown, T., Kennard, O., Rabinovich, D.

(1985) J Mol Biology 186: 805-814

Released	1993-07-15
Method	X-RAY DIFFRACTION 2.1 Å
Macromolecule	DNA (5'-D(GPGPGPGPTPCPCPC)-3') (nucleic acid)

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1D92 \| pdb_00001d92	Download File View File

REFINED CRYSTAL STRUCTURE OF AN OCTANUCLEOTIDE DUPLEX WITH G.T MISMATCHED BASE-PAIRS

Hunter, W.N., Kneale, G., Brown, T., Rabinovich, D., Kennard, O.

(1986) J Mol Biology 190: 605-618

Released	1993-07-15
Method	X-RAY DIFFRACTION 2.25 Å
Macromolecule	DNA (5'-D(GPGPGPGPCPTPCPC)-3') (nucleic acid)

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1ILC \| pdb_00001ilc	Download File View File

DNA Bending by an Adenine-Thymine Tract and Its Role in Gene Regulation.

Hizver, J., Rozenberg, H., Frolow, F., Rabinovich, D., Shakked, Z.

(2001) Proc Natl Acad Sci U S A 98: 8490-8495

Released	2002-05-08
Method	X-RAY DIFFRACTION 2.2 Å
Macromolecule	5'-D(APCPCPGPAPAPTPTPCPGPGPT)-3' (nucleic acid)

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1LJM \| pdb_00001ljm	Download File View File

DNA recognition is mediated by conformational transition and by DNA bending

Bartfeld, D., Shimon, L., Couture, G.C., Rabinovich, D., Frolow, F., Levanon, D., Groner, Y., Shakked, Z.

Structure 10: 1395-1407

Released	2002-11-06
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	RUNX1 transcription factor (protein)
Unique Ligands	CL

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1VJ4 \| pdb_00001vj4	Download File View File

SEQUENCE-DEPENDENT CONFORMATION OF AN A-DNA DOUBLE HELIX: THE CRYSTAL STRUCTURE OF THE OCTAMER D(G-G-T-A-T-A-C-C)

Shakked, Z., Rabinovich, D., Kennard, O., Cruse, W.B., Salisbury, S.A., Viswamitra, M.A.

(1983) J Mol Biology 166: 183-201

Released	1989-01-11
Method	X-RAY DIFFRACTION 1.8 Å
Macromolecule	5'-D(GPGPTPAPTPAPCPC)-3' (nucleic acid)

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1VT7 \| pdb_00001vt7	Download File View File

Structures of the mismatched duplex D(GGGTGCCC)

Rabinovich, D., Haran, T., Eisenstein, M., Shakked, Z.

(1988) J Mol Biology 200: 151-161

Released	2011-07-13
Method	X-RAY DIFFRACTION 2.5 Å
Macromolecule	DNA (5'-D(GPGPGPTPGPCPCPC)-3') (nucleic acid)

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1VT8 \| pdb_00001vt8	Download File View File

Crystal structure of D(GGGCGCCC)-hexagonal form

Shakked, Z., Guerstein-Guzikevich, G., Eisenstein, M., Frolow, F., Rabinovich, D.

(1989) Nature 342: 456-460

Released	2011-07-13
Method	X-RAY DIFFRACTION 1.9 Å
Macromolecule	DNA (5'-D(GPGPGPCPGPCPCPC)-3') (nucleic acid)

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1VT9 \| pdb_00001vt9	Download File View File

The structure and hydration of the A-DNA fragment D(GGGTACCC) at room temperature and low temperature

Eisenstein, M., Frolow, F., Shakked, Z., Rabinovich, D.

(1990) Nucleic Acids Res 18: 3185-3194

Released	2011-07-13
Method	X-RAY DIFFRACTION 2.5 Å
Macromolecule	DNA (5'-D(GPGPGPTPAPCPCPC)-3') (nucleic acid)

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1VTA \| pdb_00001vta	Download File View File

THE STRUCTURE AND HYDRATION OF THE A-DNA FRAGMENT D(GGGTACCC) AT ROOM TEMPERATURE AND LOW TEMPERATURE

Eisenstein, M., Frolow, F., Shakked, Z., Rabinovich, D.

(1990) Nucleic Acids Res 18: 3185-3194

Released	2011-07-13
Method	X-RAY DIFFRACTION 2.5 Å
Macromolecule	DNA (5'-D(GPGPGPTPAPCPCPC)-3') (nucleic acid)

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1XJX \| pdb_00001xjx	Download File View File

The crystal structures of the DNA binding sites of the RUNX1 transcription factor

Kitayner, M., Rozenberg, H., Rabinovich, D., Shakked, Z.

(2005) Acta Crystallogr D Biol Crystallogr 61: 236-246

Released	2005-03-15
Method	X-RAY DIFFRACTION 1.7 Å
Macromolecule	5'-D(TPCPTPGPCPGPGPTPC)-3' (nucleic acid) 5'-D(TPGPAPCPCPGPCPAPG)-3' (nucleic acid)

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1XJY \| pdb_00001xjy	Download File View File

The crystal structures of the DNA binding sites of the RUNX1 transcription factor

Kitayner, M., Rozenberg, H., Rabinovich, D., Shakked, Z.

(2005) Acta Crystallogr D Biol Crystallogr 61: 236-246

Released	2005-03-15
Method	X-RAY DIFFRACTION 2 Å
Macromolecule	5'-D(TPCPTPGPCPGPGPTPC)-3' (nucleic acid) 5'-D(TPGPAPCPCPGPCPAPG)-3' (nucleic acid)

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2AC0 \| pdb_00002ac0	Download File View File

Structural Basis of DNA Recognition by p53 Tetramers (complex I)

Kitayner, M., Rozenberg, H., Kessler, N., Rabinovich, D., Shakked, Z.

(2006) Mol Cell 22: 741-753

Released	2006-07-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Cellular tumor antigen p53 (protein) 5'-D(CPGPGPGPCPAPTPGPCPCPCPG)-3' (nucleic acid)
Unique Ligands	ZN

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2ADY \| pdb_00002ady	Download File View File

Structural Basis of DNA Recognition by p53 Tetramers (complex IV)

Kitayner, M., Rozenberg, H., Kessler, N., Rabinovich, D., Shakked, Z.

(2006) Mol Cell 22: 741-753

Released	2006-07-11
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Cellular tumor antigen p53 (protein) 5'-D(CPGPGPAPCPAPTPGPTPCPCPG)-3' (nucleic acid)
Unique Ligands	ZN

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2AHI \| pdb_00002ahi	Download File View File

Structural Basis of DNA Recognition by p53 Tetramers (complex III)

Kitayner, M., Rozenberg, H., Kessler, N., Rabinovich, D., Shakked, Z.

(2006) Mol Cell 22: 741-753

Released	2006-07-11
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Cellular tumor antigen p53 (protein) 5'-D(CPGPGPAPCPAPTPGPTPCPCPG)-3' (nucleic acid)
Unique Ligands	ZN

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2ATA \| pdb_00002ata	Download File View File

Structural Basis of DNA Recognition by p53 Tetramers (complex II)

Kitayner, M., Rozenberg, H., Kessler, N., Rabinovich, D., Shakked, Z.

(2006) Mol Cell 22: 741-753

Released	2006-07-11
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Cellular tumor antigen p53 (protein) 5'-D(APAPGPGPCPAPTPGPCPCPTPT)-3' (nucleic acid)
Unique Ligands	ZN

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2D94 \| pdb_00002d94	Download File View File

THE CONFORMATION OF THE DNA DOUBLE HELIX IN THE CRYSTAL IS DEPENDENT ON ITS ENVIRONMENT

Shakked, Z., Guerstein-Guzikevich, G., Eisenstein, M., Frolow, F., Rabinovich, D.

(1989) Nature 342: 456-460

Released	1994-01-15
Method	X-RAY DIFFRACTION 1.7 Å
Macromolecule	DNA (5'-D(GPGPGPCPGPCPCPC)-3') (nucleic acid)

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2D95 \| pdb_00002d95	Download File View File

LOW-TEMPERATURE STUDY OF THE A-DNA FRAGMENT D(GGGCGCCC)

Eisenstein, M., Hope, H., Haran, T.E., Frolow, F., Shakked, Z., Rabinovich, D.

(1988) Acta Crystallogr B 44: 625-628

Released	1994-01-15
Method	X-RAY DIFFRACTION 2 Å
Macromolecule	DNA (5'-D(GPGPGPCPGPCPCPC)-3') (nucleic acid)

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3IGK \| pdb_00003igk	Download File View File

Diversity in DNA recognition by p53 revealed by crystal structures with Hoogsteen base pairs (p53-DNA complex 2)

Suad, O., Rabinovich, D., Rozenberg, H., Shakked, Z.

(2010) Nat Struct Mol Biol 17: 423-429

Released	2010-03-31
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Cellular tumor antigen p53 (protein) DNA (5'-D(CPGPGPGPCPAPTPGPCPCPCPG)-3') (nucleic acid)
Unique Ligands	ZN