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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Bellenie, B.R."

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Search Summary

This query matches 905 Structures.

Refinements

Structure Determination Methodology

experimental (905)

Scientific Name of Source Organism

	Severe acute respiratory syndrome coronavirus 2 (506)
	Human immunodeficiency virus 1 (204)
	Hepacivirus hominis (55)
	Homo sapiens (45)
	HIV-1 M:B_ARV2/SF2 (43)
	hepatitis C virus genotype 1a (27)
	Human immunodeficiency virus type 1 (BRU ISOLATE) (12)
	Hepatitis C virus (isolate 1) (8)
	Escherichia coli (6)
	enterovirus D68 (6)

More...

Taxonomy

	Riboviria (860)
	Eukaryota (46)
	Riboviria (RNA viruses and viroids) (11)
	Bacteria (10)
	other sequences (4)
	Duplodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (900)
	ELECTRON MICROSCOPY (4)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (905)
	DNA (6)

Refinement Resolution (Å)

	1.0 - 1.5 (78)
	1.5 - 2.0 (616)
	2.0 - 2.5 (174)
	2.5 - 3.0 (24)
	3.0 - 3.5 (7)
	3.5 - 4.0 (4)
	4.0 - 4.5 (1)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (4)
	2000 - 2004 (20)
	2005 - 2009 (45)
	2010 - 2014 (95)
	2015 - 2019 (76)
	2020 - 2024 (658)
	2025 - 2029 (6)

Enzyme Classification Name

	Hydrolases (658)
	Transferases (16)
	Oxidoreductases (9)
	Ligases (1)

Symmetry Type

	Cyclic (744)
	Asymmetric (162)
	Dihedral (6)

SCOP Classification

	All beta proteins (225)
	Artifacts (59)
	Alpha and beta proteins (a+b) (12)
	Alpha and beta proteins (a/b) (11)
	All alpha proteins (1)

AllSelected

1 to 25 of 905 Structures

Page 1 of 37

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1BKO \| pdb_00001bko	Download File View File

THERMOSTABLE THYMIDYLATE SYNTHASE A FROM BACILLUS SUBTILIS

Stout, T.J., Schellenberger, U., Santi, D.V., Stroud, R.M.

(1998) Biochemistry 37: 14736-14747

Released	1999-02-02
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Bacillus subtilis
Macromolecule	THYMIDYLATE SYNTHASE A (protein)

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1BKP \| pdb_00001bkp	Download File View File

THERMOSTABLE THYMIDYLATE SYNTHASE A FROM BACILLUS SUBTILIS

Stout, T.J., Schellenberger, U., Santi, D.V., Stroud, R.M.

(1998) Biochemistry 37: 14736-14747

Released	1999-02-02
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bacillus subtilis
Macromolecule	THYMIDYLATE SYNTHASE A (protein)

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1BSF \| pdb_00001bsf	Download File View File

THERMOSTABLE THYMIDYLATE SYNTHASE A FROM BACILLUS SUBTILIS

Stout, T.J., Schellenberger, U., Santi, D.V., Stroud, R.M.

(1998) Biochemistry 37: 14736-14747

Released	1999-01-13
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus subtilis
Macromolecule	THYMIDYLATE SYNTHASE A (protein)

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1BSP \| pdb_00001bsp	Download File View File

THERMOSTABLE THYMIDYLATE SYNTHASE A FROM BACILLUS SUBTILIS

Stout, T.J., Schellenberger, U., Santi, D.V., Stroud, R.M.

(1998) Biochemistry 37: 14736-14747

Released	1999-02-16
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bacillus subtilis
Macromolecule	THYMIDYLATE SYNTHASE A (protein)
Unique Ligands	PO4

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1F7A \| pdb_00001f7a	Download File View File

HOW DOES A SYMMETRIC DIMER RECOGNIZE AN ASYMMETRIC SUBSTRATE? A SUBSTRATE COMPLEX OF HIV-1 PROTEASE.

Schiffer, C.A.

(2000) J Mol Biology 301: 1207-1220

Released	2001-06-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	HIV-1 CRF04_cpx Human immunodeficiency virus 1
Macromolecule	CA-P2 SUBSTRATE (protein) POL POLYPROTEIN (protein)
Unique Ligands	ACT

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1JTQ \| pdb_00001jtq	Download File View File

E. coli TS Complex with dUMP and the Pyrrolo(2,3-d)pyrimidine-based Antifolate LY341770

Sayre, P.H., Finer-Moore, J.S., Fritz, T.A., Biermann, D., Gates, S.B., MacKellar, W.C., Patel, V.F., Stroud, R.M.

(2001) J Mol Biology 313: 813-829

Released	2001-09-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	THYMIDYLATE SYNTHASE (protein)
Unique Ligands	LY3, UMP

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1JTU \| pdb_00001jtu	Download File View File

E. coli Thymidylate Synthase in a Complex with dUMP and LY338913, A Polyglutamylated Pyrrolo(2,3-d)pyrimidine-based Antifolate

Sayre, P.H., Finer-Moore, J.S., Fritz, T.A., Biermann, D., Gates, S.B., MacKellar, W.C., Patel, V.F., Stroud, R.M.

(2001) J Mol Biology 313: 813-829

Released	2001-09-19
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	THYMIDYLATE SYNTHASE (protein)
Unique Ligands	LYB, UMP

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1JU6 \| pdb_00001ju6	Download File View File

Human Thymidylate Synthase Complex with dUMP and LY231514, A Pyrrolo(2,3-d)pyrimidine-based Antifolate

Sayre, P.H., Finer-Moore, J.S., Fritz, T.A., Biermann, D., Gates, S.B., MacKellar, W.C., Patel, V.F., Stroud, R.M.

(2001) J Mol Biology 313: 813-829

Released	2001-09-19
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Homo sapiens
Macromolecule	THYMIDYLATE SYNTHASE (protein)
Unique Ligands	LYA, PO4, UMP

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1JUJ \| pdb_00001juj	Download File View File

Human Thymidylate Synthase Bound to dUMP and LY231514, a Pyrrolo(2,3-d)pyrimidine-based Antifolate

Sayre, P.H., Finer-Moore, J.S., Fritz, T.A., Biermann, D., Gates, S.B., MacKellar, W.C., Patel, V.F., Stroud, R.M.

(2001) J Mol Biology 313: 813-829

Released	2001-09-19
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	THYMIDYLATE SYNTHASE (protein)
Unique Ligands	LYA, UMP

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1K6C \| pdb_00001k6c	Download File View File

LACK OF SYNERGY FOR INHIBITORS TARGETING A MULTI-DRUG RESISTANT HIV-1 PROTEASE

Schiffer, C.A.

(2002) Protein Sci 11: 418-429

Released	2002-02-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	POL polyprotein (protein)
Unique Ligands	ACT, MK1

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1K6P \| pdb_00001k6p	Download File View File

LACK OF SYNERGY FOR INHIBITORS TARGETING A MULTI-DRUG RESISTANT HIV-1 PROTEASE

Schiffer, C.A.

(2002) Protein Sci 11: 418-429

Released	2002-02-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	POL polyprotein (protein)
Unique Ligands	ACT, XN3

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1K6T \| pdb_00001k6t	Download File View File

LACK OF SYNERGY FOR INHIBITORS TARGETING A MULTI-DRUG RESISTANT HIV-1 PROTEASE

Schiffer, C.A.

(2002) Protein Sci 11: 418-429

Released	2002-02-06
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	POL polyprotein (protein)
Unique Ligands	ACT, XN1

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1K6V \| pdb_00001k6v	Download File View File

LACK OF SYNERGY FOR INHIBITORS TARGETING A MULTI-DRUG RESISTANT HIV-1 PROTEASE

Schiffer, C.A.

(2002) Protein Sci 11: 418-429

Released	2002-02-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	POL polyprotein (protein)
Unique Ligands	ACT, XN2

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1KF9 \| pdb_00001kf9	Download File View File

PHAGE DISPLAY DERIVED VARIANT OF HUMAN GROWTH HORMONE COMPLEXED WITH TWO COPIES OF THE EXTRACELLULAR DOMAIN OF ITS RECEPTOR

Schiffer, C.A., Ultsch, M., Walsh, S., Somers, W., De Vos, A.M., Kossiakoff, A.A.

(2002) J Mol Biology 316: 277-289

Released	2002-11-20
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	EXTRACELLULAR DOMAIN HUMAN GROWTH HORMONE RECEPTOR (1-238) (protein) PHAGE DISPLAY DERIVED VARIANT HUMAN GROWTH HORMONE (protein)

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1KJ4 \| pdb_00001kj4	Download File View File

SUBSTRATE SHAPE DETERMINES SPECIFICITY OF RECOGNITION RECOGNITION FOR HIV-1 PROTEASE: ANALYSIS OF CRYSTAL STRUCTURES OF SIX SUBSTRATE COMPLEXES

Schiffer, C.A.

(2002) Structure 10: 369-381

Released	2002-03-06
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Human immunodeficiency virus 1 Human immunodeficiency virus type 1 group M subtype B (isolate JRCSF)
Macromolecule	POL polyprotein (protein) gag polyprotein (protein)
Unique Ligands	ACT

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1KJ7 \| pdb_00001kj7	Download File View File

SUBSTRATE SHAPE DETERMINES SPECIFICITY OF RECOGNITION RECOGNITION FOR HIV-1 PROTEASE: ANALYSIS OF CRYSTAL STRUCTURES OF SIX SUBSTRATE COMPLEXES

Schiffer, C.A.

(2002) Structure 10: 369-381

Released	2002-03-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human immunodeficiency virus 1 Human immunodeficiency virus type 1 group M subtype B (isolate JRCSF)
Macromolecule	POL POLYPROTEIN (protein) gag polyprotein (protein)
Unique Ligands	ACT

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1KJF \| pdb_00001kjf	Download File View File

SUBSTRATE SHAPE DETERMINES SPECIFICITY OF RECOGNITION RECOGNITION FOR HIV-1 PROTEASE: ANALYSIS OF CRYSTAL STRUCTURES OF SIX SUBSTRATE COMPLEXES

Schiffer, C.A.

(2002) Structure 10: 369-381

Released	2002-03-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human immunodeficiency virus 1 Human immunodeficiency virus type 1 group M subtype B (isolate JRCSF)
Macromolecule	GAG POLYPROTEIN (protein) POL POLYPROTEIN (protein)
Unique Ligands	ACT

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1KJG \| pdb_00001kjg	Download File View File

SUBSTRATE SHAPE DETERMINES SPECIFICITY OF RECOGNITION RECOGNITION FOR HIV-1 PROTEASE: ANALYSIS OF CRYSTAL STRUCTURES OF SIX SUBSTRATE COMPLEXES

Schiffer, C.A.

(2002) Structure 10: 369-381

Released	2002-03-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human immunodeficiency virus 1 Human immunodeficiency virus type 1 group M subtype B (isolate ARV2/SF2)
Macromolecule	GAG POLYPROTEIN (protein) POL POLYPROTEIN (protein)
Unique Ligands	ACT

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1KJH \| pdb_00001kjh	Download File View File

SUBSTRATE SHAPE DETERMINES SPECIFICITY OF RECOGNITION RECOGNITION FOR HIV-1 PROTEASE: ANALYSIS OF CRYSTAL STRUCTURES OF SIX SUBSTRATE COMPLEXES

Schiffer, C.A.

(2002) Structure 10: 369-381

Released	2002-03-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human immunodeficiency virus 1 Human immunodeficiency virus type 1 group M subtype B (isolate BH10)
Macromolecule	POL POLYPROTEIN (protein)
Unique Ligands	ACT

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1MT7 \| pdb_00001mt7	Download File View File

Viability of a drug-resistant HIV-1 protease mutant: structural insights for better antiviral therapy

Prabu-Jeyabalan, M., Nalivaika, E.A., King, N.M., Schiffer, C.A.

(2003) J Virol 77: 1305-1315

Released	2003-01-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Human immunodeficiency virus 1 Human immunodeficiency virus type 1
Macromolecule	PROTEASE RETROPEPSIN (protein) Substrate analogue (protein)
Unique Ligands	ACT

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1MT8 \| pdb_00001mt8	Download File View File

Viability of a drug-resistant HIV-1 protease mutant: structural insights for better antiviral therapy

Prabu-Jeyabalan, M., Nalivaika, E.A., King, N.M., Schiffer, C.A.

(2003) J Virol 77: 1305-1315

Released	2003-01-07
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	HIV-1 CRF04_cpx Human immunodeficiency virus 1
Macromolecule	Capsid-p2 substrate peptide of HIV-1 Gag polyprotein (protein) PROTEASE RETROPEPSIN (protein)
Unique Ligands	ACT

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1MT9 \| pdb_00001mt9	Download File View File

Viability of a drug-resistant HIV-1 protease mutant: structural insights for better antiviral therapy

Prabu-Jeyabalan, M., Nalivaika, E.A., King, N.M., Schiffer, C.A.

(2003) J Virol 77: 1305-1315

Released	2003-01-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	PROTEASE RETROPEPSIN (protein) p1-p6 Gag substrate decapeptide (protein)
Unique Ligands	PO4

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1MTB \| pdb_00001mtb	Download File View File

Viability of a drug-resistant HIV-1 protease mutant: structural insights for better antiviral therapy

Prabu-Jeyabalan, M., Nalivaika, E.A., King, N.M., Schiffer, C.A.

(2003) J Virol 77: 1305-1315

Released	2003-01-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	PROTEASE RETROPEPSIN (protein)
Unique Ligands	ROC

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1N49 \| pdb_00001n49	Download File View File

Viability of a Drug-Resistant HIV-1 Protease Variant: Structural Insights for Better Anti-Viral Therapy

Prabu-Jeyabalan, M., Nalivaika, E.A., King, N.M., Schiffer, C.A.

(2003) J Virol 77: 1306-1315

Released	2003-01-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease (protein)
Unique Ligands	RIT

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1T3R \| pdb_00001t3r	Download File View File

HIV protease wild-type in complex with TMC114 inhibitor

King, N.M., Prabu-Jeyabalan, M., Nalivaika, E.A., Wigernick, P.B., de Bethune, M.P., Schiffer, C.A.

(2005) J Med Chem 48: 1813-1822

Released	2005-05-03
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	protease RETROPEPSIN (protein)
Unique Ligands	017, PO4

1 to 25 of 905 Structures

Page 1 of 37

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1BKO | pdb_00001bko

1BKP | pdb_00001bkp

1BSF | pdb_00001bsf

1BSP | pdb_00001bsp

1F7A | pdb_00001f7a

1JTQ | pdb_00001jtq

1JTU | pdb_00001jtu

1JU6 | pdb_00001ju6

1JUJ | pdb_00001juj

1K6C | pdb_00001k6c

1K6P | pdb_00001k6p

1K6T | pdb_00001k6t

1K6V | pdb_00001k6v

1KF9 | pdb_00001kf9

1KJ4 | pdb_00001kj4

1KJ7 | pdb_00001kj7

1KJF | pdb_00001kjf

1KJG | pdb_00001kjg

1KJH | pdb_00001kjh

1MT7 | pdb_00001mt7

1MT8 | pdb_00001mt8

1MT9 | pdb_00001mt9

1MTB | pdb_00001mtb

1N49 | pdb_00001n49

1T3R | pdb_00001t3r