RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Basran, J."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 51 Structures.

Refinements

Structure Determination Methodology

experimental (51)

Scientific Name of Source Organism

	Glycine max (15)
	Alcaligenes faecalis (10)
	Homo sapiens (8)
	Saccharomyces cerevisiae (6)
	Methylophilus methylotrophus (4)
	Arthrobacter globiformis (3)
	Methylophilus methylotrophus W3A1 (2)
	Gallus gallus (1)
	Mus musculus (1)
	Sorghum bicolor (1)

More...

Taxonomy

	Eukaryota (31)
	Bacteria (20)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (49)
	NEUTRON DIFFRACTION (5)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (51)

Refinement Resolution (Å)

	1.0 - 1.5 (16)
	1.5 - 2.0 (18)
	2.0 - 2.5 (13)
	2.5 - 3.0 (4)
	3.0 - 3.5 (1)
	3.5 - 4.0 (1)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (8)
	2005 - 2009 (22)
	2010 - 2014 (5)
	2015 - 2019 (4)
	2020 - 2024 (10)

Enzyme Classification Name

	Oxidoreductases (41)
	Transferases (2)

Symmetry Type

	Asymmetric (29)
	Cyclic (20)
	Dihedral (5)

SCOP Classification

	Alpha and beta proteins (a/b) (10)
	All alpha proteins (24)
	Small proteins (10)
	Artifacts (7)
	All beta proteins (7)
	Alpha and beta proteins (a+b) (3)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 51 Structures

Page 1 of 3

Sort by

Explore in 3D

1DJN \| pdb_00001djn	Download File View File

STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF RECOMBINANT WILD TYPE TRIMETHYLAMINE DEHYDROGENASE FROM METHYLOPHILUS METHYLOTROPHUS (SP. W3A1)

Trickey, P., Basran, J., Lian, L.-Y., Chen, Z.-W., Barton, J.D., Sutcliffe, M.J., Scrutton, N.S., Mathews, F.S.

(2000) Biochemistry 39: 7678-7688

Released	1999-12-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Methylophilus methylotrophus W3A1
Macromolecule	TRIMETHYLAMINE DEHYDROGENASE (protein)
Unique Ligands	ADP, FMN, SF4

Explore in 3D

1DJQ \| pdb_00001djq	Download File View File

STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF RECOMBINANT C30A MUTANT OF TRIMETHYLAMINE DEHYDROGENASE FROM METHYLOPHILUS METHYLOTROPHUS (SP. W3A1)

Trickey, P., Basran, J., Lian, L.-Y., Chen, Z.-W., Barton, J.D., Sutcliffe, M.J., Scrutton, N.S., Mathews, F.S.

(2000) Biochemistry 39: 7678-7688

Released	1999-12-22
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Methylophilus methylotrophus W3A1
Macromolecule	TRIMETHYLAMINE DEHYDROGENASE (protein)
Unique Ligands	ADP, FMN, SF4

Explore in 3D

1O94 \| pdb_00001o94	Download File View File

Ternary complex between trimethylamine dehydrogenase and electron transferring flavoprotein

Leys, D., Basran, J., Talfournier, F., Sutcliffe, M.J., Scrutton, N.S.

(2003) Nat Struct Biol 10: 219

Released	2003-02-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methylophilus methylotrophus
Macromolecule	ELECTRON TRANSFER FLAVOPROTEIN ALPHA-SUBUNIT (protein) ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT (protein) TRIMETHYLAMINE DEHYDROGENASE (protein)
Unique Ligands	ADP, AMP, FMN, SF4

Explore in 3D

1O95 \| pdb_00001o95	Download File View File

Ternary complex between trimethylamine dehydrogenase and electron transferring flavoprotein

Leys, D., Basran, J., Talfournier, F., Sutcliffe, M.J., Scrutton, N.S.

(2003) Nat Struct Biol 10: 219

Released	2003-02-06
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Methylophilus methylotrophus
Macromolecule	ELECTRON TRANSFER FLAVOPROTEIN ALPHA-SUBUNIT (protein) ELECTRON TRANSFER FLAVOPROTEIN BETA-SUBUNIT (protein) TRIMETHYLAMINE DEHYDROGENASE (protein)
Unique Ligands	ADP, AMP, FMN, SF4

Explore in 3D

1O96 \| pdb_00001o96	Download File View File

Structure of electron transferring flavoprotein for Methylophilus methylotrophus.

Leys, D., Basran, J., Talfournier, F., Sutcliffe, M.J., Scrutton, N.S.

(2003) Nat Struct Biol 10: 219

Released	2003-02-06
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Methylophilus methylotrophus
Macromolecule	ELECTRON TRANSFERRING FLAVOPROTEIN ALPHA-SUBUNIT (protein) ELECTRON TRANSFERRING FLAVOPROTEIN BETA-SUBUNIT (protein)
Unique Ligands	AMP, FAD

Explore in 3D

1O97 \| pdb_00001o97	Download File View File

Structure of electron transferring flavoprotein from Methylophilus methylotrophus, recognition loop removed by limited proteolysis

Leys, D., Basran, J., Talfournier, F., Sutcliffe, M.J., Scrutton, N.S.

(2003) Nat Struct Biol 10: 219

Released	2003-02-06
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Methylophilus methylotrophus
Macromolecule	ELECTRON TRANSFERRING FLAVOPROTEIN ALPHA-SUBUNIT (protein) ELECTRON TRANSFERRING FLAVOPROTEIN BETA-SUBUNIT (protein)
Unique Ligands	AMP, FAD

Explore in 3D

1PJ5 \| pdb_00001pj5	Download File View File

Crystal structure of dimethylglycine oxidase of Arthrobacter globiformis in complex with acetate

Leys, D., Basran, J., Scrutton, N.S.

(2003) EMBO J 22: 4038-4048

Released	2003-10-07
Method	X-RAY DIFFRACTION 1.61 Å
Organisms	Arthrobacter globiformis
Macromolecule	N,N-dimethylglycine oxidase (protein)
Unique Ligands	ACT, FAD, NA

Explore in 3D

1PJ6 \| pdb_00001pj6	Download File View File

Crystal structure of dimethylglycine oxidase of Arthrobacter globiformis in complex with folic acid

Leys, D., Basran, J., Scrutton, N.S.

(2003) EMBO J 22: 4038-4048

Released	2003-10-07
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Arthrobacter globiformis
Macromolecule	N,N-dimethylglycine oxidase (protein)
Unique Ligands	FAD, FOL, NA

Explore in 3D

1PJ7 \| pdb_00001pj7	Download File View File

Structure of dimethylglycine oxidase of Arthrobacter globiformis in complex with folinic acid

Leys, D., Basran, J., Scrutton, N.S.

(2003) EMBO J 22: 4038-4048

Released	2003-10-07
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Arthrobacter globiformis
Macromolecule	N,N-dimethylglycine oxidase (protein)
Unique Ligands	FAD, FFO, NA

Explore in 3D

1T9G \| pdb_00001t9g	Download File View File

Structure of the human MCAD:ETF complex

Toogood, H.S., van Thiel, A., Basran, J., Sutcliffe, M.J., Scrutton, N.S., Leys, D.

(2004) J Biological Chem 279: 32904-32912

Released	2004-06-08
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Acyl-CoA dehydrogenase, medium-chain specific, mitochondrial (protein) Electron transfer flavoprotein alpha-subunit, mitochondrial (protein) Electron transfer flavoprotein beta-subunit (protein)
Unique Ligands	AMP, FAD

Explore in 3D

2AGL \| pdb_00002agl	Download File View File

Crystal structure of the phenylhydrazine adduct of aromatic amine dehydrogenase from Alcaligenes faecalis

Masgrau, L., Roujeinikova, A., Johannissen, L.O., Hothi, P., Basran, J., Ranaghan, K.E., Mulholland, A.J., Sutcliffe, M.J., Scrutton, N.S., Leys, D.

(2006) Science 312: 237-241

Released	2006-04-25
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Alcaligenes faecalis
Macromolecule	Aromatic amine dehydrogenase (protein)
Unique Ligands	PHZ

Explore in 3D

2AGW \| pdb_00002agw	Download File View File

Crystal structure of tryptamine-reduced aromatic amine dehydrogenase (AADH) from Alcaligenes faecalis in complex with tryptamine

Masgrau, L., Roujeinikova, A., Johannissen, L.O., Hothi, P., Basran, J., Ranaghan, K.E., Mulholland, A.J., Sutcliffe, M.J., Scrutton, N.S., Leys, D.

(2006) Science 312: 237-241

Released	2006-04-25
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Alcaligenes faecalis
Macromolecule	Aromatic amine dehydrogenase (protein)
Unique Ligands	TSS

Explore in 3D

2AGX \| pdb_00002agx	Download File View File

Crystal structure of the Schiff base intermediate in the reductive half-reaction of aromatic amine dehydrogenase (AADH) with tryptamine. P212121 form

Masgrau, L., Roujeinikova, A., Johannissen, L.O., Hothi, P., Basran, J., Ranaghan, K.E., Mulholland, A.J., Sutcliffe, M.J., Scrutton, N.S., Leys, D.

(2006) Science 312: 237-241

Released	2006-04-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Alcaligenes faecalis
Macromolecule	Aromatic amine dehydrogenase (protein)
Unique Ligands	TSH

Explore in 3D

2AGY \| pdb_00002agy	Download File View File

Crystal structure of the Schiff base intermediate in the reductive half-reaction of aromatic amine dehydrogenase (AADH) with tryptamine. Monoclinic form

Masgrau, L., Roujeinikova, A., Johannissen, L.O., Hothi, P., Basran, J., Ranaghan, K.E., Mulholland, A.J., Sutcliffe, M.J., Scrutton, N.S., Leys, D.

(2006) Science 312: 237-241

Released	2006-04-25
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Alcaligenes faecalis
Macromolecule	Aromatic amine dehydrogenase (protein)
Unique Ligands	TSH

Explore in 3D

2AGZ \| pdb_00002agz	Download File View File

Crystal structure of the carbinolamine intermediate in the reductive half-reaction of aromatic amine dehydrogenase (AADH) with tryptamine. F222 form

Masgrau, L., Roujeinikova, A., Johannissen, L.O., Hothi, P., Basran, J., Ranaghan, K.E., Mulholland, A.J., Sutcliffe, M.J., Scrutton, N.S., Leys, D.

(2006) Science 312: 237-241

Released	2006-04-25
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Alcaligenes faecalis
Macromolecule	Aromatic amine dehydrogenase (protein)
Unique Ligands	TSC, ZN

Explore in 3D

2AH0 \| pdb_00002ah0	Download File View File

Crystal structure of the carbinolamine intermediate in the reductive half-reaction of aromatic amine dehydrogenase (AADH) with tryptamine. Monoclinic form

Masgrau, L., Roujeinikova, A., Johannissen, L.O., Hothi, P., Basran, J., Ranaghan, K.E., Mulholland, A.J., Sutcliffe, M.J., Scrutton, N.S., Leys, D.

(2006) Science 312: 237-241

Released	2006-04-25
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Alcaligenes faecalis
Macromolecule	Aromatic amine dehydrogenase (protein)
Unique Ligands	TSC, TSH

Explore in 3D

2AH1 \| pdb_00002ah1	Download File View File

Crystal structure of aromatic amine dehydrogenase (AADH) from Alcaligenes faecalis

Masgrau, L., Roujeinikova, A., Johannissen, L.O., Hothi, P., Basran, J., Ranaghan, K.E., Mulholland, A.J., Sutcliffe, M.J., Scrutton, N.S., Leys, D.

(2006) Science 312: 237-241

Released	2006-04-25
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Alcaligenes faecalis
Macromolecule	Aromatic amine dehydrogenase (protein)

Explore in 3D

2GGN \| pdb_00002ggn	Download File View File

Conformational mobility in the active site of a heme peroxidase

Badyal, S.K., Joyce, M.G., Sharp, K.H., Raven, E.L., Moody, P.C.E.

(2006) J Biological Chem 281: 24512-24520

Released	2006-06-13
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Glycine max
Macromolecule	cytosolic ascorbate peroxidase 1 (protein)
Unique Ligands	HEM, NA, SO4

Explore in 3D

2GHC \| pdb_00002ghc	Download File View File

Conformational mobility in the active site of a heme peroxidase

Badyal, S.K., Joyce, M.G., Sharp, K.H., Raven, E.L., Moody, P.C.

(2006) J Biological Chem 281: 24512-24520

Released	2006-06-13
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Glycine max
Macromolecule	cytosolic ascorbate peroxidase 1 (protein)
Unique Ligands	HEM, NA, NO

Explore in 3D

2GHD \| pdb_00002ghd	Download File View File

Conformational mobility in the active site of a heme peroxidase

Badyal, S.K., Joyce, M.G., Sharp, K.H., Raven, E.L., Moody, P.C.E.

(2006) J Biological Chem 281: 24512-24520

Released	2006-06-13
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Glycine max
Macromolecule	cytosolic ascorbate peroxidase 1 (protein)
Unique Ligands	CYN, HEM, SO4

Explore in 3D

2GHE \| pdb_00002ghe	Download File View File

Conformational mobility in the active site of a heme peroxidase

Badyal, S.K., Joyce, M.G., Sharp, K.H., Raven, E.L., Moody, P.C.E.

(2006) J Biological Chem 281: 24512-24520

Released	2006-06-13
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Glycine max
Macromolecule	cytosolic ascorbate peroxidase 1 (protein)
Unique Ligands	HEM, NA

Explore in 3D

2GHH \| pdb_00002ghh	Download File View File

Conformational mobility in the active site of a heme peroxidase

Badyal, S.K., Joyce, M.G., Sharp, K.H., Raven, E.L., Moody, P.C.E.

(2006) J Biological Chem 281: 24512-24520

Released	2006-06-13
Method	X-RAY DIFFRACTION 2.013 Å
Organisms	Glycine max
Macromolecule	cytosolic ascorbate peroxidase 1 (protein)
Unique Ligands	HEM, K, NO

Explore in 3D

2GHK \| pdb_00002ghk	Download File View File

Conformational mobility in the active site of a heme peroxidase

Badyal, S.K., Joyce, M.G., Sharp, K.H., Raven, E.L., Moody, P.C.E.

(2006) J Biological Chem 281: 24512-24520

Released	2006-06-13
Method	X-RAY DIFFRACTION 1.999 Å
Organisms	Glycine max
Macromolecule	cytosolic ascorbate peroxidase 1 (protein)
Unique Ligands	CYN, HEM, K

Explore in 3D

2H3X \| pdb_00002h3x	Download File View File

Crystal Structure of an Electron Transfer Complex Between Aromatic Amine Dehydrogenase and Azurin from Alcaligenes Faecalis (Form 3)

Sukumar, N., Chen, Z., Leys, D., Scrutton, N.S., Ferrati, D., Merli, A., Rossi, G.L., Bellamy, H.D., Chistoserdov, A., Davidson, V.L., Mathews, F.S.

(2006) Biochemistry 45: 13500-13510

Released	2006-11-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Alcaligenes faecalis
Macromolecule	Aromatic Amine Dehydrogenase (protein) Azurin (protein)
Unique Ligands	CU

Explore in 3D

2H47 \| pdb_00002h47	Download File View File

Crystal Structure of an Electron Transfer Complex Between Aromatic Amine Dephydrogenase and Azurin from Alcaligenes Faecalis (Form 1)

Sukumar, N., Chen, Z., Leys, D., Scrutton, N.S., Ferrati, D., Merli, A., Rossi, G.L., Bellamy, H.D., Chistoserdov, A., Davidson, V.L., Mathews, F.S.

(2006) Biochemistry 45: 13500-13510

Released	2006-11-21
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Alcaligenes faecalis
Macromolecule	Aromatic Amine Dehydrogenase (protein) Azurin (protein)
Unique Ligands	CU

1 to 25 of 51 Structures

Page 1 of 3

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1DJN | pdb_00001djn

1DJQ | pdb_00001djq

1O94 | pdb_00001o94

1O95 | pdb_00001o95

1O96 | pdb_00001o96

1O97 | pdb_00001o97

1PJ5 | pdb_00001pj5

1PJ6 | pdb_00001pj6

1PJ7 | pdb_00001pj7

1T9G | pdb_00001t9g

2AGL | pdb_00002agl

2AGW | pdb_00002agw

2AGX | pdb_00002agx

2AGY | pdb_00002agy

2AGZ | pdb_00002agz

2AH0 | pdb_00002ah0

2AH1 | pdb_00002ah1

2GGN | pdb_00002ggn

2GHC | pdb_00002ghc

2GHD | pdb_00002ghd

2GHE | pdb_00002ghe

2GHH | pdb_00002ghh

2GHK | pdb_00002ghk

2H3X | pdb_00002h3x

2H47 | pdb_00002h47