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234,785 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Yang, M.H."

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Search Summary

This query matches 28 Structures.

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Structure Determination Methodology

experimental (28)

Scientific Name of Source Organism

	Escherichia coli (18)
	Escherichia coli K-12 (6)
	Arabidopsis thaliana (1)
	Dendroaspis jamesoni kaimosae (1)
	Escherichia coli DH5[alpha] (1)
	Homo sapiens (1)

Taxonomy

	Bacteria (25)
	Eukaryota (3)

Experimental Method

	X-RAY DIFFRACTION (24)
	SOLUTION NMR (4)

Polymer Entity Type

	Protein (28)
	DNA (2)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (4)
	1.5 - 2.0 (9)
	2.0 - 2.5 (8)
	2.5 - 3.0 (2)

Release Date

	1990 - 1994 (1)
	2000 - 2004 (4)
	2005 - 2009 (3)
	2015 - 2019 (5)
	2020 - 2024 (15)

Enzyme Classification Name

	Oxidoreductases (21)
	Hydrolases (1)

Symmetry Type

	Cyclic (25)
	Asymmetric (4)

SCOP Classification

	Alpha and beta proteins (a+b) (10)
	Peptides (1)
	Small proteins (1)

AllSelected

1 to 25 of 28 Structures

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1DRS \| pdb_00001drs	Download File View File

THREE-DIMENSIONAL STRUCTURE OF THE RGD-CONTAINING NEUROTOXIN HOMOLOGUE, DENDROASPIN

Sutcliffe, M.J., Jaseja, M., Hyde, E.I., Lu, X., Williams, J.A.

(1994) Nat Struct Biol 1: 802-807

Released	1994-12-20
Method	SOLUTION NMR
Organisms	Dendroaspis jamesoni kaimosae
Macromolecule	DENDROASPIN (protein)

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1E9K \| pdb_00001e9k	Download File View File

The structure of the RACK1 interaction sites located within the unique N-terminal region of the cAMP-specific phosphodiesterase, PDE4D5.

Bolger, G.B., Smith, K.J., McCahill, A., Hyde, E.I., Steele, M.R., Houslay, M.D.

(2007) Cell Signal 19: 2612-2624

Released	2001-10-18
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	cAMP-specific 3',5'-cyclic phosphodiesterase 4D (protein)

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1ICR \| pdb_00001icr	Download File View File

THE STRUCTURE OF ESCHERICHIA COLI NITROREDUCTASE COMPLEXED WITH NICOTINIC ACID

Lovering, A.L., Hyde, E.I., Searle, P.F., White, S.A.

(2001) J Mol Biology 309: 203-213

Released	2001-04-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	OXYGEN-INSENSITIVE NAD(P)H NITROREDUCTASE (protein)
Unique Ligands	FMN, NIO

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1ICU \| pdb_00001icu	Download File View File

THE STRUCTURE OF ESCHERICHIA COLI NITROREDUCTASE COMPLEXED WITH NICOTINIC ACID

Lovering, A.L., Hyde, E.I., Searle, P.F., White, S.A.

(2001) J Mol Biology 309: 203-213

Released	2001-04-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	OXYGEN-INSENSITIVE NAD(P)H NITROREDUCTASE (protein)
Unique Ligands	FMN, NIO

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1ICV \| pdb_00001icv	Download File View File

THE STRUCTURE OF ESCHERICHIA COLI NITROREDUCTASE COMPLEXED WITH NICOTINIC ACID

Lovering, A.L., Hyde, E.I., Searle, P.F., White, S.A.

(2001) J Mol Biology 309: 203-213

Released	2001-04-18
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	OXYGEN-INSENSITIVE NAD(P)H NITROREDUCTASE (protein)
Unique Ligands	FMN, NIO

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1YKI \| pdb_00001yki	Download File View File

The structure of E. coli nitroreductase bound with the antibiotic nitrofurazone

Race, P.R., Lovering, A.L., Green, R.M., Ossor, A., White, S.A., Searle, P.F., Wrighton, C.J., Hyde, E.I.

(2005) J Biological Chem 280: 13256-13264

Released	2005-02-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	Oxygen-insensitive NAD(P)H nitroreductase (protein)
Unique Ligands	CIT, DMS, FMN, NFZ

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1YLR \| pdb_00001ylr	Download File View File

The structure of E.coli nitroreductase with bound acetate, crystal form 1

Race, P.R., Lovering, A.L., Green, R.M., Ossor, A., White, S.A., Searle, P.F., Wrighton, C.J., Hyde, E.I.

(2005) J Biological Chem 280: 13256-13264

Released	2005-02-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli
Macromolecule	Oxygen-insensitive NAD(P)H nitroreductase (protein)
Unique Ligands	ACT, FMN

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1YLU \| pdb_00001ylu	Download File View File

The structure of E. coli nitroreductase with bound acetate, crystal form 2

Race, P.R., Lovering, A.L., Green, R.M., Ossor, A., White, S.A., Searle, P.F., Wrighton, C.J., Hyde, E.I.

(2005) J Biological Chem 280: 13256-13264

Released	2005-02-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	Oxygen-insensitive NAD(P)H nitroreductase (protein)
Unique Ligands	ACT, FMN

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2N5G \| pdb_00002n5g	Download File View File

NMR structure of KorA, a plasmid-encoded, global transcription regulator KorA

Rajasekar, K.V., Lovering, A.L., Dancea, F.V., Scott, D.J., Harris, S., Bingle, L.E., Roessle, M., Thomas, C.M., Hyde, E.I., White, S.A.

(2016) Nucleic Acids Res 44: 4947-4956

Released	2016-07-20
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	TrfB transcriptional repressor protein (protein)

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5CKT \| pdb_00005ckt	Download File View File

Crystal Structure of KorA, a plasmid-encoded, global transcription regulator

White, S.A., Hyde, E.I., Lovering, A.L.

(2016) Nucleic Acids Res 44: 4947-4956

Released	2016-04-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	TrfB transcriptional repressor protein (protein)
Unique Ligands	ACT

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5CLV \| pdb_00005clv	Download File View File

Crystal Structure of KorA-operator DNA complex (KorA-OA)

White, S.A., Hyde, E.I., Rajasekar, K.V.

(2016) Nucleic Acids Res 44: 4947-4956

Released	2016-04-06
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	TrfB transcriptional repressor protein (protein) 5'-D(CPCPAPAPGPTPTPTPAPGPCPTPAPAPAPCPTPTPGPGP)-3' (nucleic acid)

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5CM3 \| pdb_00005cm3	Download File View File

Crystal Structure of KorA, a plasmid-encoded, global transcription regulator

White, S.A., Hyde, E.I., Rajasekar, K.V.

(2016) Nucleic Acids Res 44: 4947-4956

Released	2016-04-06
Method	X-RAY DIFFRACTION 2.302 Å
Organisms	Escherichia coli
Macromolecule	TrfB transcriptional repressor protein (protein) 5'-D(CPCPAPAPGPTPTPTPAPGPCPTPAPAPAPCPTPTPGPGP)-3' (nucleic acid)

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6G7G \| pdb_00006g7g	Download File View File

Structure of SPH (Self-Incompatibility Protein Homologue) proteins, a widespread family of small, highly stable, secreted proteins from plants

Rajasekar, K.V., Coulthard, R.J., Ride, J.P., Ji, S., Winn, P.J., Wheeler, M.P., Hyde, E.I., Smith, L.J.

(2019) Biochem J 476: 809-826

Released	2019-03-06
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	S-protein homolog 15 (protein)

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7NB9 \| pdb_00007nb9	Download File View File

E. coli NfsA with nitrofurantoin

Day, M.D., Jarrom, D., Grainger, A.I., Parr, R.J., Hyde, E.I., White, S.A.

(2021) Biochem J 478: 2601-2617

Released	2021-07-21
Method	X-RAY DIFFRACTION 1.09 Å
Organisms	Escherichia coli K-12
Macromolecule	Oxygen-insensitive NADPH nitroreductase (protein)
Unique Ligands	DMS, FMN, U6Z

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7NIY \| pdb_00007niy	Download File View File

E. coli NfsA with FMN

Day, M.D., Jarrom, D., Hyde, E.I., White, S.A.

(2021) Biochem J 478: 2601-2617

Released	2021-07-21
Method	X-RAY DIFFRACTION 1.03 Å
Organisms	Escherichia coli K-12
Macromolecule	Oxygen-insensitive NADPH nitroreductase (protein)
Unique Ligands	CL, EDO, FMN, HQE, IMD

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7NMP \| pdb_00007nmp	Download File View File

E. coli NfsA with hydroquinone

Day, M.D., Jarrom, D., Parr, R.J., Hyde, E.I., White, S.A.

(2021) Biochem J 478: 2601-2617

Released	2021-07-21
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Escherichia coli K-12
Macromolecule	Oxygen-insensitive NADPH nitroreductase (protein)
Unique Ligands	CL, DMS, EDO, FMN, HQE

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7NNX \| pdb_00007nnx	Download File View File

E. coli NfsA with 1,4-benzoquinone

Day, M.D., Jarrom, D., Hyde, E.I., White, S.A.

(2021) Biochem J 478: 2601-2617

Released	2021-07-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli K-12
Macromolecule	Oxygen-insensitive NADPH nitroreductase (protein)
Unique Ligands	CL, DMS, EDO, FMN, HQE, PLQ

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7Q0O \| pdb_00007q0o	Download File View File

E. coli NfsA

White, S.A., Grainger, A., Parr, R., Day, M.A., Jarrom, D., Graziano, A., Searle, P.F., Hyde, E.I.

(2022) FEBS Lett 596: 2425-2440

Released	2022-06-22
Method	X-RAY DIFFRACTION 0.96 Å
Organisms	Escherichia coli K-12
Macromolecule	Oxygen-insensitive NADPH nitroreductase (protein)
Unique Ligands	FMN

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7Z0W \| pdb_00007z0w	Download File View File

E. coli NfsA bound to NADP+

White, S.A., Grainger, A., Parr, R., Day, M.A., Jarrom, D., Graziano, A., Searle, P.F., Hyde, E.I.

(2022) FEBS Lett 596: 2425-2440

Released	2022-07-20
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Escherichia coli K-12
Macromolecule	Oxygen-insensitive NADPH nitroreductase (protein)
Unique Ligands	ATR, FMN, MG

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8AJX \| pdb_00008ajx	Download File View File

E. coli NfsA with Fumarate

Day, M.A., Jarrom, D., White, S.A., Hyde, E.I.

(2023) Proteins 91: 585-592

Released	2023-01-18
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Escherichia coli
Macromolecule	Oxygen-insensitive NADPH nitroreductase (protein)
Unique Ligands	EDO, FMN, FUM

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8C5E \| pdb_00008c5e	Download File View File

E. coli NfsB-T41Q/N71S/F124T mutant bound to nicotinic acid

White, S.A., Hyde, E.I., Day, M.A.

(2023) Int J Mol Sci 24:

Released	2023-04-19
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Escherichia coli
Macromolecule	Oxygen-insensitive NAD(P)H nitroreductase (protein)
Unique Ligands	EDO, FMN, NIO

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8C5F \| pdb_00008c5f	Download File View File

E. coli NfsB-T41Q/N71S/F124T mutant bound to acetate

White, S.A., Hyde, E.I., Day, M.A.

(2023) Int J Mol Sci 24:

Released	2023-04-19
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli
Macromolecule	Oxygen-insensitive NAD(P)H nitroreductase (protein)
Unique Ligands	ACT, EDO, FMN

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8C5P \| pdb_00008c5p	Download File View File

E. coli NfsB mutant N71S T41L with acetate

Day, M.A., White, S.A., Hyde, E.I.

(2023) Int J Mol Sci 24:

Released	2023-04-19
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Escherichia coli
Macromolecule	Oxygen-insensitive NAD(P)H nitroreductase (protein)
Unique Ligands	ACT, DMS, EDO, FMN

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8CCV \| pdb_00008ccv	Download File View File

E. coli NfsB mutant T41LN71S with nicotinate

Day, M.A., White, S.A., Hyde, E.I., Searle, P.F.

(2023) Int J Mol Sci 24:

Released	2023-04-19
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	Oxygen-insensitive NAD(P)H nitroreductase (protein)
Unique Ligands	FMN, NIO

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8CJ0 \| pdb_00008cj0	Download File View File

E. coli NfsB-T41Q/N71S/F124T/M127V mutant bound to nicotinate

White, S.A., Hyde, E.I., Day, M.A.

(2023) Int J Mol Sci 24:

Released	2023-04-19
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Escherichia coli
Macromolecule	Oxygen-insensitive NAD(P)H nitroreductase (protein)
Unique Ligands	EDO, FMN, NIO

1 to 25 of 28 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1DRS | pdb_00001drs

1E9K | pdb_00001e9k

1ICR | pdb_00001icr

1ICU | pdb_00001icu

1ICV | pdb_00001icv

1YKI | pdb_00001yki

1YLR | pdb_00001ylr

1YLU | pdb_00001ylu

2N5G | pdb_00002n5g

5CKT | pdb_00005ckt

5CLV | pdb_00005clv

5CM3 | pdb_00005cm3

6G7G | pdb_00006g7g

7NB9 | pdb_00007nb9

7NIY | pdb_00007niy

7NMP | pdb_00007nmp

7NNX | pdb_00007nnx

7Q0O | pdb_00007q0o

7Z0W | pdb_00007z0w

8AJX | pdb_00008ajx

8C5E | pdb_00008c5e

8C5F | pdb_00008c5f

8C5P | pdb_00008c5p

8CCV | pdb_00008ccv

8CJ0 | pdb_00008cj0