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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Weiss, M.S."

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Search Summary

This query matches 74 Structures.

Refinements

Structure Determination Methodology

experimental (74)

Scientific Name of Source Organism

	Homo sapiens (47)
	Human immunodeficiency virus 1 (15)
	Achromobacter xylosoxidans (5)
	Helicobacter pylori (4)
	Ralstonia pickettii 12J (4)
	Mus musculus (3)
	Severe acute respiratory syndrome coronavirus 2 (3)
	Staphylococcus epidermidis RP62A (2)
	Deinococcus radiodurans (1)
	Hepatitis C virus subtype 1b (1)

More...

Taxonomy

	Eukaryota (51)
	Riboviria (19)
	Bacteria (16)

Experimental Method

	X-RAY DIFFRACTION (63)
	ELECTRON MICROSCOPY (10)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (74)

Refinement Resolution (Å)

	1.0 - 1.5 (9)
	1.5 - 2.0 (19)
	2.0 - 2.5 (19)
	2.5 - 3.0 (16)
	3.0 - 3.5 (8)
	3.5 - 4.0 (2)

Release Date

	2005 - 2009 (7)
	2010 - 2014 (31)
	2015 - 2019 (12)
	2020 - 2024 (24)

Enzyme Classification Name

	Oxidoreductases (14)
	Hydrolases (6)
	Transferases (5)
	Lyases (1)

Membrane Protein Annotation

MemProtMD (1)

Symmetry Type

	Asymmetric (47)
	Cyclic (26)
	Dihedral (1)

SCOP Classification

	All beta proteins (17)
	Alpha and beta proteins (a+b) (15)
	Alpha and beta proteins (a/b) (4)
	All alpha proteins (6)
	Artifacts (6)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 74 Structures

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2EW5 \| pdb_00002ew5	Download File View File

Structure of Helicobacter Pylori peptide deformylase in complex with inhibitor

Cai, J.

(2006) Protein Sci 15: 2071-2081

Released	2006-10-24
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Helicobacter pylori
Macromolecule	peptide deformylase (protein)
Unique Ligands	CO, Y12

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2EW6 \| pdb_00002ew6	Download File View File

Structure of Helicobacter Pylori peptide deformylase in complex with inhibitor

Cai, J.

(2006) Protein Sci 15: 2071-2081

Released	2006-10-24
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Helicobacter pylori
Macromolecule	peptide deformylase (protein)
Unique Ligands	CO, Y13

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2EW7 \| pdb_00002ew7	Download File View File

Crystal Structure of Helicobacter Pylori peptide deformylase

Cai, J.

(2006) Protein Sci 15: 2071-2081

Released	2006-10-24
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Helicobacter pylori
Macromolecule	peptide deformylase (protein)
Unique Ligands	CO

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2FVC \| pdb_00002fvc	Download File View File

Crystal structure of NS5B BK strain (delta 24) in complex with a 3-(1,1-Dioxo-2H-(1,2,4)-benzothiadiazin-3-yl)-4-hydroxy-2(1H)-quinolinone

Concha, N.O., Wonacott, A., Singh, O.

(2006) J Med Chem 49: 971-983

Released	2007-01-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Hepatitis C virus subtype 1b
Macromolecule	polyprotein (protein)
Unique Ligands	888

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2LN0 \| pdb_00002ln0	Download File View File

Structure of MOZ

Qiu, Y.

(2012) Genes Dev 26: 1376-1391

Released	2012-06-27
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Histone acetyltransferase KAT6A (protein)
Unique Ligands	ZN

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2XWZ \| pdb_00002xwz	Download File View File

STRUCTURE OF THE RECOMBINANT NATIVE NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS complexed with nitrite

Antonyuk, S.V., Leferink, N.G.H., Han, C., Heyes, D.J., Rigby, S.E.J., Hough, M.A., Eady, R.R., Scrutton, N.S., Hasnain, S.S.

(2011) Biochemistry 50: 4121

Released	2011-05-18
Method	X-RAY DIFFRACTION 2.34 Å
Organisms	Achromobacter xylosoxidans
Macromolecule	DISSIMILATORY COPPER-CONTAINING NITRITE REDUCTASE (protein)
Unique Ligands	ACT, CU, NO, NO2, SO4

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2XX0 \| pdb_00002xx0	Download File View File

STRUCTURE OF THE N90S-H254F MUTANT OF NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS

Antonyuk, S.V., Leferink, N.G.H., Han, C., Heyes, D.J., Rigby, S.E.J., Hough, M.A., Eady, R.R., Scrutton, N.S., Hasnain, S.S.

(2011) Biochemistry 50: 4121

Released	2011-05-18
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Achromobacter xylosoxidans
Macromolecule	DISSIMILATORY COPPER-CONTAINING NITRITE REDUCTASE (protein)
Unique Ligands	CU, MES, PG4, ZN

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2XX1 \| pdb_00002xx1	Download File View File

STRUCTURE OF THE N90S MUTANT OF NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS complexed with nitrite

Antonyuk, S.V., Leferink, N.G.H., Han, C., Heyes, D.J., Rigby, S.E.J., Hough, M.A., Eady, R.R., Scrutton, N.S., Hasnain, S.S.

(2011) Biochemistry 50: 4121

Released	2011-05-18
Method	X-RAY DIFFRACTION 3 Å
Organisms	Achromobacter xylosoxidans
Macromolecule	DISSIMILATORY COPPER-CONTAINING NITRITE REDUCTASE (protein)
Unique Ligands	CU, NO2, SO4

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2XXF \| pdb_00002xxf	Download File View File

Cu metallated H254F mutant of nitrite reductase

Hough, M.A., Eady, R.R., Hasnain, S.S.

(2011) Biochemistry 50: 4121

Released	2011-05-18
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Achromobacter xylosoxidans
Macromolecule	DISSIMILATORY COPPER-CONTAINING NITRITE REDUCTASE (protein)
Unique Ligands	CU, MES, PEG, PG4, ZN

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2XXG \| pdb_00002xxg	Download File View File

STRUCTURE OF THE N90S MUTANT OF NITRITE REDUCTASE FROM ALCALIGENES XYLOSOXIDANS

Hough, M.A., Eady, R.R., Hasnain, S.S.

(2008) Biochemistry 47: 13547

Released	2011-05-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Achromobacter xylosoxidans
Macromolecule	DISSIMILATORY COPPER-CONTAINING NITRITE REDUCTASE (protein)
Unique Ligands	CU, MES, PEG, PG4, ZN

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2YQB \| pdb_00002yqb	Download File View File

Structure of P93A variant of three-domain heme-Cu nitrite reductase from Ralstonia pickettii at 1.4 A resolution

Antonyuk, S.V., Han, C., Eady, R.R., Hasnain, S.S.

(2013) Nature 496: 123-126

Released	2013-04-03
Method	X-RAY DIFFRACTION 1.41 Å
Organisms	Ralstonia pickettii 12J
Macromolecule	COPPER-CONTAINING NITRITE REDUCTASE (protein)
Unique Ligands	CU, HEC

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3B7J \| pdb_00003b7j	Download File View File

Crystal structure of (3R)-Hydroxyacyl-Acyl Carrier Protein Dehydratase(FabZ) from Helicobacter pylori complexed with juglone

Zhang, L., Kong, Y.H., Wu, D., Shen, X., Jiang, H.L.

(2008) Acta Pharmacol Sin 29: 870-876

Released	2008-09-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Helicobacter pylori
Macromolecule	(3R)-hydroxymyristoyl-acyl carrier protein dehydratase (protein)
Unique Ligands	BEN, CL, JUG

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3DON \| pdb_00003don	Download File View File

Crystal structure of shikimate dehydrogenase from Staphylococcus epidermidis

Han, C., Hu, T., Wu, D., Zhou, J., Shen, X., Qu, D., Jiang, H.

(2009) FEBS J 276: 1125-1139

Released	2009-05-05
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Staphylococcus epidermidis RP62A
Macromolecule	Shikimate dehydrogenase (protein)
Unique Ligands	GOL

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3DOO \| pdb_00003doo	Download File View File

Crystal structure of shikimate dehydrogenase from Staphylococcus epidermidis complexed with shikimate

Han, C., Hu, T., Wu, D., Zhou, J., Shen, X., Qu, D., Jiang, H.

(2009) FEBS J 276: 1125-1139

Released	2009-05-05
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Staphylococcus epidermidis RP62A
Macromolecule	Shikimate dehydrogenase (protein)
Unique Ligands	SKM

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3V43 \| pdb_00003v43	Download File View File

Crystal structure of MOZ

Qiu, Y., Li, F.

(2012) Genes Dev 26: 1376-1391

Released	2012-06-27
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Homo sapiens
Macromolecule	Histone H3.1 (protein) Histone acetyltransferase KAT6A (protein)
Unique Ligands	ACT, ZN

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3VXM \| pdb_00003vxm	Download File View File

The complex between C1-28 TCR and HLA-A24 bound to HIV-1 Nef134-10(2F) peptide

Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.

(2013) Sci Rep 3: 3097-3097

Released	2013-10-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	10-mer peptide from Protein Nef (protein) Beta-2-microglobulin (protein) C1-28 TCR alpha chain (protein) C1-28 TCR beta chain (protein) HLA class I histocompatibility antigen, A-24 alpha chain (protein)
Unique Ligands	CO

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3VXN \| pdb_00003vxn	Download File View File

HLA-A24 in complex with HIV-1 Nef134-10(wt)

Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.

(2013) Sci Rep 3: 3097-3097

Released	2013-10-23
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	10-mer peptide from Protein Nef (protein) Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-24 alpha chain (protein)

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3VXO \| pdb_00003vxo	Download File View File

HLA-A24 in complex with HIV-1 Nef134-10(2F)

Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.

(2013) Sci Rep 3: 3097-3097

Released	2013-10-23
Method	X-RAY DIFFRACTION 2.61 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	10-mer peptide from Protein Nef (protein) Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-24 alpha chain (protein)

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3VXP \| pdb_00003vxp	Download File View File

HLA-A24 in complex with HIV-1 Nef134-10(6L)

Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.

(2013) Sci Rep 3: 3097-3097

Released	2013-10-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	10-mer peptide from Protein Nef (protein) Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-24 alpha chain (protein)

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3VXQ \| pdb_00003vxq	Download File View File

H27-14 TCR specific for HLA-A24-Nef134-10

Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.

(2013) Sci Rep 3: 3097-3097

Released	2013-10-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	H27-14 TCR alpha chain (protein) H27-14 TCR beta chain (protein)

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3VXR \| pdb_00003vxr	Download File View File

The complex between H27-14 TCR and HLA-A24 bound to HIV-1 Nef134-10(wt) peptide

Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.

(2013) Sci Rep 3: 3097-3097

Released	2013-10-23
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	10-mer peptide from Protein Nef (protein) Beta-2-microglobulin (protein) H27-14 TCR alpha chain (protein) H27-14 TCR beta chain (protein) HLA class I histocompatibility antigen, A-24 alpha chain (protein)

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3VXS \| pdb_00003vxs	Download File View File

The complex between H27-14 TCR and HLA-A24 bound to HIV-1 Nef134-10(6L) peptide

Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.

(2013) Sci Rep 3: 3097-3097

Released	2013-10-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	10-mer peptide from Protein Nef (protein) Beta-2-microglobulin (protein) H27-14 TCR alpha chain (protein) H27-14 TCR beta chain (protein) HLA class I histocompatibility antigen, A-24 alpha chain (protein)

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3VXT \| pdb_00003vxt	Download File View File

T36-5 TCR specific for HLA-A24-Nef134-10

Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.

(2013) Sci Rep 3: 3097-3097

Released	2013-10-23
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	T36-5 TCR alpha chain (protein) T36-5 TCR beta chain (protein)

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3VXU \| pdb_00003vxu	Download File View File

The complex between T36-5 TCR and HLA-A24 bound to HIV-1 Nef134-10(2F) peptide

Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.

(2013) Sci Rep 3: 3097-3097

Released	2013-10-23
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	10-mer peptide from Protein Nef (protein) Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-24 alpha chain (protein) T36-5 TCR alpha chain (protein) T36-5 TCR beta chain (protein)

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3W0W \| pdb_00003w0w	Download File View File

The complex between T36-5 TCR and HLA-A24 bound to HIV-1 Nef134-10(2F) peptide in space group P212121

Shimizu, A., Fukai, S., Yamagata, A., Iwamoto, A.

(2013) Sci Rep 3: 3097-3097

Released	2013-11-06
Method	X-RAY DIFFRACTION 2.603 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	10-mer peptide from Protein Nef (protein) Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-24 alpha chain (protein) T36-5 TCR alpha chain (protein) T36-5 TCR beta chain (protein)

1 to 25 of 74 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2EW5 | pdb_00002ew5

2EW6 | pdb_00002ew6

2EW7 | pdb_00002ew7

2FVC | pdb_00002fvc

2LN0 | pdb_00002ln0

2XWZ | pdb_00002xwz

2XX0 | pdb_00002xx0

2XX1 | pdb_00002xx1

2XXF | pdb_00002xxf

2XXG | pdb_00002xxg

2YQB | pdb_00002yqb

3B7J | pdb_00003b7j

3DON | pdb_00003don

3DOO | pdb_00003doo

3V43 | pdb_00003v43

3VXM | pdb_00003vxm

3VXN | pdb_00003vxn

3VXO | pdb_00003vxo

3VXP | pdb_00003vxp

3VXQ | pdb_00003vxq

3VXR | pdb_00003vxr

3VXS | pdb_00003vxs

3VXT | pdb_00003vxt

3VXU | pdb_00003vxu

3W0W | pdb_00003w0w