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234,785 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Svensson, G."

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Search Summary

This query matches 12 Structures.

Refinements

Structure Determination Methodology

experimental (12)

Scientific Name of Source Organism

	Homo sapiens (7)
	synthetic construct (3)
	Mycobacterium tuberculosis H37Rv (2)
	Severe acute respiratory syndrome coronavirus (2)
	Severe acute respiratory syndrome coronavirus 2 (2)
	Enterovirus A71 (1)
	Equine encephalosis virus (1)

Taxonomy

	Eukaryota (7)
	Riboviria (6)
	other sequences (3)
	Bacteria (2)

Experimental Method

	X-RAY DIFFRACTION (10)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

	Protein (12)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (2)
	2.0 - 2.5 (3)
	2.5 - 3.0 (3)
	3.0 - 3.5 (1)
	3.5 - 4.0 (2)

Release Date

	2010 - 2014 (5)
	2015 - 2019 (1)
	2020 - 2024 (6)

Enzyme Classification Name

	Hydrolases (4)
	Isomerases (2)
	Oxidoreductases (2)

Symmetry Type

	Asymmetric (8)
	Cyclic (6)

SCOP Classification

	All beta proteins (2)
	Alpha and beta proteins (a/b) (4)
	Alpha and beta proteins (a+b) (2)
	All alpha proteins (2)
	Multi-domain proteins (alpha and beta) (1)

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1 to 12 of 12 Structures

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4GPI \| pdb_00004gpi	Download File View File

Crystal structure of human B type phosphoglycerate mutase

Zhou, L., He, C.

(2013) Nat Commun 4: 1790-1790

Released	2013-05-22
Method	X-RAY DIFFRACTION 2.0817 Å
Organisms	Homo sapiens
Macromolecule	Phosphoglycerate mutase 1 (protein)
Unique Ligands	CL

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4GPZ \| pdb_00004gpz	Download File View File

Crystal structure of human B type phosphoglycerate mutase H11 phosphorylated form

He, C., Zhou, L., Zhang, L.

(2013) Nat Commun 4: 1790-1790

Released	2013-05-22
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	Phosphoglycerate mutase 1 (protein)
Unique Ligands	CL, MES

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4GWG \| pdb_00004gwg	Download File View File

Crystal Structure Analysis of 6-phosphogluconate dehydrogenase apo-form

He, C., Zhou, L., Zhang, L.

(2012) Cancer Cell 22: 585-600

Released	2012-11-28
Method	X-RAY DIFFRACTION 1.3907 Å
Organisms	Homo sapiens
Macromolecule	6-phosphogluconate dehydrogenase, decarboxylating (protein)
Unique Ligands	MES

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4GWK \| pdb_00004gwk	Download File View File

Crystal structure of 6-phosphogluconate dehydrogenase complexed with 3-phosphoglyceric acid

He, C., Zhou, L., Zhang, L.

(2012) Cancer Cell 22: 585-600

Released	2012-11-28
Method	X-RAY DIFFRACTION 1.534 Å
Organisms	Homo sapiens
Macromolecule	6-phosphogluconate dehydrogenase, decarboxylating (protein)
Unique Ligands	3PG, MES

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4IKA \| pdb_00004ika	Download File View File

Crystal structure of EV71 3Dpol-VPg

Chen, C., Wang, Y.X., Lou, Z.Y.

(2013) J Virol 87: 5755-5768

Released	2013-09-04
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Enterovirus A71
Macromolecule	3Dpol (protein) VPg (protein)
Unique Ligands	NI

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6C6K \| pdb_00006c6k	Download File View File

Structural basis for preferential recognition of cap 0 RNA by a human IFIT1-IFIT3 protein complex

Amarasinghe, G.K., Leung, D.W., Johnson, B., Xu, W.

(2018) Immunity 48: 487-499.e5

Released	2018-04-04
Method	X-RAY DIFFRACTION 2.54 Å
Organisms	Equine encephalosis virus Homo sapiens
Macromolecule	Interferon-induced protein with tetratricopeptide repeats 1 (protein) Interferon-induced protein with tetratricopeptide repeats 3 (protein) RNA (5'-R((M7G)PAPUPAPGPGPCPGPGPCP*G)-3') (nucleic acid)
Unique Ligands	MG

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7C01 \| pdb_00007c01	Download File View File

Molecular basis for a potent human neutralizing antibody targeting SARS-CoV-2 RBD

Shi, R., Qi, J., Wang, Q., Gao, F.G., Yan, J.

(2020) Nature 584: 120-124

Released	2020-05-27
Method	X-RAY DIFFRACTION 2.88 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	CB6 heavy chain (protein) CB6 light chain (protein) Spike protein S1 (protein)
Unique Ligands	NAG

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7CJF \| pdb_00007cjf	Download File View File

Crystal structure of SARS-CoV-2 RBD in complex with a neutralizing antibody Fab

Guo, Y., Li, X., Zhang, G., Fu, D., Schweizer, L., Zhang, H., Rao, Z.

(2021) Nat Commun 12: 2623-2623

Released	2020-11-11
Method	X-RAY DIFFRACTION 2.108 Å
Organisms	Homo sapiens Severe acute respiratory syndrome coronavirus 2
Macromolecule	Spike protein S1 (protein) antibody heavy chain (protein) antibody light chain (protein)
Unique Ligands	NAG

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7WNT \| pdb_00007wnt	Download File View File

RNase J from Mycobacterium tuberculosis

Li, J., Bao, L., Hu, J., Zhan, B., Li, Z.

(2023) Nat Commun 14: 2280

Released	2023-01-25
Method	X-RAY DIFFRACTION 2.44 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Ribonuclease J (protein)
Unique Ligands	ZN

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7WNU \| pdb_00007wnu	Download File View File

Mycobacterium tuberculosis Rnase J complex with 7nt RNA

Li, J., Hu, J., Bao, L., Zhan, B., Li, Z.

(2023) Nat Commun 14: 2280

Released	2023-01-25
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Mycobacterium tuberculosis H37Rv synthetic construct
Macromolecule	Ribonuclease J (protein) RNA (5'-R(PAPAPAPAPAPAP*A)-3') (nucleic acid)
Unique Ligands	ZN

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7XOE \| pdb_00007xoe	Download File View File

Cryo-EM structure of S glycoprotein encoded by the Covid-19 mRNA vaccine candidate RQ3013 (Prefusion state)

Wu, Z., Yu, Z., Tan, S., Lu, J., Lu, G., Lin, J.

(2023) Sci Bull (Beijing) 68: 3192-3206

Released	2024-02-14
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Severe acute respiratory syndrome coronavirus synthetic construct
Macromolecule	Spike glycoprotein,peptide (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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7XOG \| pdb_00007xog	Download File View File

Cryo-EM structure of S glycoprotein encoded by the Covid-19 mRNA vaccine candidate RQ3013 (Postfusion state)

Wu, Z., Yu, Z., Tan, S., Lu, J., Lu, G., Lin, J.

(2023) Sci Bull (Beijing) 68: 3192-3206

Released	2024-03-20
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Severe acute respiratory syndrome coronavirus synthetic construct
Macromolecule	Spike glycoprotein,peptide (protein)
Unique Ligands	MAN, NAG
Unique branched monosaccharides	MAN, NAG

1 to 12 of 12 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

4GPI | pdb_00004gpi

Crystal structure of human B type phosphoglycerate mutase

4GPZ | pdb_00004gpz

Crystal structure of human B type phosphoglycerate mutase H11 phosphorylated form

4GWG | pdb_00004gwg

Crystal Structure Analysis of 6-phosphogluconate dehydrogenase apo-form

4GWK | pdb_00004gwk

Crystal structure of 6-phosphogluconate dehydrogenase complexed with 3-phosphoglyceric acid

4IKA | pdb_00004ika

Crystal structure of EV71 3Dpol-VPg

6C6K | pdb_00006c6k

Structural basis for preferential recognition of cap 0 RNA by a human IFIT1-IFIT3 protein complex

7C01 | pdb_00007c01

Molecular basis for a potent human neutralizing antibody targeting SARS-CoV-2 RBD

7CJF | pdb_00007cjf

Crystal structure of SARS-CoV-2 RBD in complex with a neutralizing antibody Fab

7WNT | pdb_00007wnt

RNase J from Mycobacterium tuberculosis

7WNU | pdb_00007wnu

Mycobacterium tuberculosis Rnase J complex with 7nt RNA

7XOE | pdb_00007xoe

Cryo-EM structure of S glycoprotein encoded by the Covid-19 mRNA vaccine candidate RQ3013 (Prefusion state)

7XOG | pdb_00007xog

Cryo-EM structure of S glycoprotein encoded by the Covid-19 mRNA vaccine candidate RQ3013 (Postfusion state)

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4GPI | pdb_00004gpi

4GPZ | pdb_00004gpz

4GWG | pdb_00004gwg

4GWK | pdb_00004gwk

4IKA | pdb_00004ika

6C6K | pdb_00006c6k

7C01 | pdb_00007c01

7CJF | pdb_00007cjf

7WNT | pdb_00007wnt

7WNU | pdb_00007wnu

7XOE | pdb_00007xoe

7XOG | pdb_00007xog