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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Sauve, V."

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Search Summary

This query matches 20 Structures.

Refinements

Structure Determination Methodology

experimental (20)

Scientific Name of Source Organism

	Escherichia coli (6)
	Rattus norvegicus (5)
	Homo sapiens (4)
	Thermus thermophilus HB27 (4)
	Paracoccus denitrificans (3)
	Bactrocera dorsalis (2)
	Bos taurus (2)

Taxonomy

	Bacteria (13)
	Eukaryota (7)

Experimental Method

X-RAY DIFFRACTION (20)

Polymer Entity Type

Protein (20)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (4)
	2.0 - 2.5 (7)
	2.5 - 3.0 (5)
	3.5 - 4.0 (1)
	> 4.5 (2)

Release Date

	2000 - 2004 (6)
	2005 - 2009 (7)
	2010 - 2014 (2)
	2015 - 2019 (3)
	2020 - 2024 (2)

Enzyme Classification Name

	Transferases (9)
	Isomerases (3)
	Ligases (3)
	Lyases (3)

Symmetry Type

	Asymmetric (18)
	Cyclic (1)
	Dihedral (1)

SCOP Classification

	All beta proteins (3)
	Alpha and beta proteins (a+b) (4)
	Alpha and beta proteins (a/b) (2)
	Artifacts (2)

AllSelected

1 to 20 of 20 Structures

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1FC4 \| pdb_00001fc4	Download File View File

2-AMINO-3-KETOBUTYRATE COA LIGASE

Schmidt, A., Matte, A., Li, Y., Sivaraman, J., Larocque, R., Schrag, J.D., Smith, C., Sauve, V., Cygler, M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2001) Biochemistry 40: 5151-5160

Released	2001-05-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	2-AMINO-3-KETOBUTYRATE CONENZYME A LIGASE (protein)
Unique Ligands	AKB, PLP

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1KK9 \| pdb_00001kk9	Download File View File

CRYSTAL STRUCTURE OF E. COLI YCIO

Jia, J., Lunin, V.V., Sauve, V., Huang, L.-W., Matte, A., Cygler, M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2002) Proteins 49: 139-141

Released	2002-12-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	probable translation factor yciO (protein)
Unique Ligands	SO4

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1KSK \| pdb_00001ksk	Download File View File

STRUCTURE OF RSUA

Sivaraman, J., Sauve, V., Larocque, R., Stura, E.A., Schrag, J.D., Cygler, M., Matte, A.

(2002) Nat Struct Biol 9: 353-358

Released	2002-04-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	RIBOSOMAL SMALL SUBUNIT PSEUDOURIDINE SYNTHASE A (protein)
Unique Ligands	URA

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1KSL \| pdb_00001ksl	Download File View File

STRUCTURE OF RSUA

Sivaraman, J., Sauve, V., Larocque, R., Stura, E.A., Schrag, J.D., Cygler, M., Matte, A., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2002) Nat Struct Biol 9: 353-358

Released	2002-04-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	RIBOSOMAL SMALL SUBUNIT PSEUDOURIDINE SYNTHASE A (protein)
Unique Ligands	URA

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1KSV \| pdb_00001ksv	Download File View File

STRUCTURE OF RSUA

Sivaraman, J., Sauve, V., Larocque, R., Stura, E.A., Schrag, J.D., Cygler, M., Matte, A.

(2002) Nat Struct Biol 9: 353-358

Released	2002-04-24
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Escherichia coli
Macromolecule	RIBOSOMAL SMALL SUBUNIT PSEUDOURIDINE SYNTHASE A (protein)
Unique Ligands	U5P

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1MC3 \| pdb_00001mc3	Download File View File

CRYSTAL STRUCTURE OF RFFH

Sivaraman, J., Sauve, V., Matte, A., Cygler, M., Montreal-Kingston Bacterial Structural Genomics Initiative (BSGI)

(2002) J Biological Chem 277: 44214-44219

Released	2002-11-20
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli
Macromolecule	GLUCOSE-1-PHOSPHATE THYMIDYLYLTRANSFERASE (protein)
Unique Ligands	MG, TTP

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2OX5 \| pdb_00002ox5	Download File View File

The SoxYZ complex of Paracoccus pantotrophus

Bruno, S., Sauve, V., Berks, B.C., Hemmings, A.M.

(2007) J Biological Chem 282: 23194-23204

Released	2007-05-22
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Paracoccus denitrificans
Macromolecule	SoxY protein (protein) SoxZ protein (protein)
Unique Ligands	ACT, EDO, SO4

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2OXG \| pdb_00002oxg	Download File View File

The SoxYZ Complex of Paracoccus pantotrophus

Sauve, V., Berks, B.C., Hemmings, A.M.

(2007) J Biological Chem 282: 23194-23204

Released	2007-05-22
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Paracoccus denitrificans
Macromolecule	SoxY protein (protein) SoxZ protein (protein)
Unique Ligands	EDO, SO4

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2OXH \| pdb_00002oxh	Download File View File

The SOXYZ Complex of Paracoccus Pantotrophus

Sauve, V., Berks, B.C., Hemmings, A.M.

(2007) J Biological Chem 282: 23194-23204

Released	2007-05-22
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Paracoccus denitrificans
Macromolecule	SoxY protein (protein) SoxZ protein (protein)
Unique Ligands	EDO

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2WDC \| pdb_00002wdc	Download File View File

Termus thermophilus Sulfate thiohydrolase SoxB in complex with glycerol

Sauve, V., Roversi, P., Leath, K.J., Garman, E.F., Antrobus, R., Lea, S.M., Berks, B.C.

(2009) J Biological Chem 284: 21707

Released	2009-06-16
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Thermus thermophilus HB27
Macromolecule	SULFUR OXIDATION PROTEIN SOXB (protein)
Unique Ligands	ACT, GOL, MN, TBU

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2WDD \| pdb_00002wdd	Download File View File

Termus thermophilus Sulfate thiohydrolase SoxB in complex with Sulfate

Sauve, V., Roversi, P., Leath, K.J., Garman, E.F., Antrobus, R., Lea, S.M., Berks, B.C.

(2009) J Biological Chem 284: 21707

Released	2009-06-16
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Thermus thermophilus HB27
Macromolecule	SULFUR OXIDATION PROTEIN SOXB (protein)
Unique Ligands	ACT, MN, SO4, TBU

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2WDE \| pdb_00002wde	Download File View File

Termus thermophilus Sulfate thiohydrolase SoxB in complex with thiosulfate

Sauve, V., Roversi, P., Leath, K.J., Garman, E.F., Antrobus, R., Lea, S.M., Berks, B.C.

(2009) J Biological Chem 284: 21707

Released	2009-06-16
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Thermus thermophilus HB27
Macromolecule	SULFUR OXIDATION PROTEIN SOXB (protein)
Unique Ligands	MN, TBU, THJ

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2WDF \| pdb_00002wdf	Download File View File

Termus thermophilus Sulfate thiohydrolase SoxB

Sauve, V., Roversi, P., Leath, K.J., Garman, E.F., Antrobus, R., Lea, S.M., Berks, B.C.

(2009) J Biological Chem 284: 21707

Released	2009-06-16
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Thermus thermophilus HB27
Macromolecule	SULFUR OXIDATION PROTEIN SOXB (protein)
Unique Ligands	MN, TBU

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4K7D \| pdb_00004k7d	Download File View File

Crystal Structure of Parkin C-terminal RING domains

Sauve, V., Trempe, J.-F., Menade, M., Gehring, K.

(2013) Science 340: 1451-1455

Released	2013-05-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Rattus norvegicus
Macromolecule	E3 ubiquitin-protein ligase parkin (protein)
Unique Ligands	CL, MLI, ZN

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4K95 \| pdb_00004k95	Download File View File

Crystal Structure of Parkin

Seirafi, M., Menade, M., Sauve, V., Kozlov, G., Trempe, J.-F., Nagar, B., Gehring, K.

(2013) Science 340: 1451-1455

Released	2013-05-15
Method	X-RAY DIFFRACTION 6.499 Å
Organisms	Rattus norvegicus
Macromolecule	E3 ubiquitin-protein ligase parkin (protein)
Unique Ligands	ZN

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4ZYN \| pdb_00004zyn	Download File View File

Crystal Structure of Parkin E3 ubiquitin ligase (linker deletion; delta 86-130)

Lilov, A., Sauve, V., Trempe, J.F., Rodionov, D., Wang, J., Gehring, K.

(2015) EMBO J 34: 2492-2505

Released	2015-08-19
Method	X-RAY DIFFRACTION 2.54 Å
Organisms	Rattus norvegicus
Macromolecule	E3 ubiquitin-protein ligase parkin (protein)
Unique Ligands	SO4, ZN

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6DJW \| pdb_00006djw	Download File View File

Crystal Structure of pParkin (REP and RING2 deleted)-pUb-UbcH7 complex

Sauve, V., Sung, G., Trempe, J.F., Gehring, K.

(2018) Nat Struct Mol Biol 25: 623-630

Released	2018-07-04
Method	X-RAY DIFFRACTION 3.801 Å
Organisms	Bactrocera dorsalis Bos taurus Homo sapiens
Macromolecule	RBR-type E3 ubiquitin transferase,RBR-type E3 ubiquitin transferase (protein) Ubiquitin (protein) Ubiquitin-conjugating enzyme E2 L3 (protein)
Unique Ligands	ZN

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6DJX \| pdb_00006djx	Download File View File

Crystal Structure of pParkin-pUb-UbcH7 complex

Sauve, V., Sung, G., Trempe, J.F., Gehring, K.

(2018) Nat Struct Mol Biol 25: 623-630

Released	2018-07-04
Method	X-RAY DIFFRACTION 4.801 Å
Organisms	Bactrocera dorsalis Bos taurus Homo sapiens
Macromolecule	RBR-type E3 ubiquitin transferase,RBR-type E3 ubiquitin transferase (protein) Ubiquitin (protein) Ubiquitin-conjugating enzyme E2 L3 (protein)
Unique Ligands	ZN

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7US1 \| pdb_00007us1	Download File View File

Structure of parkin (R0RB) bound to two phospho-ubiquitin molecules

Fakih, R., Sauve, V., Gehring, K.

(2022) J Biological Chem 298: 102114-102114

Released	2022-06-22
Method	X-RAY DIFFRACTION 2.484 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	E3 ubiquitin-protein ligase parkin (protein) Ubiquitin-G76 deletion (protein)
Unique Ligands	EDO, PEG, ZN

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8W31 \| pdb_00008w31	Download File View File

Crystal structure of parkin (R0RB):2pUb with activator compound

Sauve, V., Gehring, K.

(2024) Nat Commun 15: 7707-7707

Released	2024-08-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	E3 ubiquitin-protein ligase parkin (protein) Ubiquitin (protein)
Unique Ligands	A1AE9, GOL, ZN

1 to 20 of 20 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1FC4 | pdb_00001fc4

2-AMINO-3-KETOBUTYRATE COA LIGASE

1KK9 | pdb_00001kk9

CRYSTAL STRUCTURE OF E. COLI YCIO

1KSK | pdb_00001ksk

STRUCTURE OF RSUA

1KSL | pdb_00001ksl

STRUCTURE OF RSUA

1KSV | pdb_00001ksv

STRUCTURE OF RSUA

1MC3 | pdb_00001mc3

CRYSTAL STRUCTURE OF RFFH

2OX5 | pdb_00002ox5

The SoxYZ complex of Paracoccus pantotrophus

2OXG | pdb_00002oxg

The SoxYZ Complex of Paracoccus pantotrophus

2OXH | pdb_00002oxh

The SOXYZ Complex of Paracoccus Pantotrophus

2WDC | pdb_00002wdc

Termus thermophilus Sulfate thiohydrolase SoxB in complex with glycerol

2WDD | pdb_00002wdd

Termus thermophilus Sulfate thiohydrolase SoxB in complex with Sulfate

2WDE | pdb_00002wde

Termus thermophilus Sulfate thiohydrolase SoxB in complex with thiosulfate

2WDF | pdb_00002wdf

Termus thermophilus Sulfate thiohydrolase SoxB

4K7D | pdb_00004k7d

Crystal Structure of Parkin C-terminal RING domains

4K95 | pdb_00004k95

Crystal Structure of Parkin

4ZYN | pdb_00004zyn

Crystal Structure of Parkin E3 ubiquitin ligase (linker deletion; delta 86-130)

6DJW | pdb_00006djw

Crystal Structure of pParkin (REP and RING2 deleted)-pUb-UbcH7 complex

6DJX | pdb_00006djx

Crystal Structure of pParkin-pUb-UbcH7 complex

7US1 | pdb_00007us1

Structure of parkin (R0RB) bound to two phospho-ubiquitin molecules

8W31 | pdb_00008w31

Crystal structure of parkin (R0RB):2pUb with activator compound

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1FC4 | pdb_00001fc4

1KK9 | pdb_00001kk9

1KSK | pdb_00001ksk

1KSL | pdb_00001ksl

1KSV | pdb_00001ksv

1MC3 | pdb_00001mc3

2OX5 | pdb_00002ox5

2OXG | pdb_00002oxg

2OXH | pdb_00002oxh

2WDC | pdb_00002wdc

2WDD | pdb_00002wdd

2WDE | pdb_00002wde

2WDF | pdb_00002wdf

4K7D | pdb_00004k7d

4K95 | pdb_00004k95

4ZYN | pdb_00004zyn

6DJW | pdb_00006djw

6DJX | pdb_00006djx

7US1 | pdb_00007us1

8W31 | pdb_00008w31