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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Rak, A."

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Search Summary

This query matches 343 Structures.

Refinements

Structure Determination Methodology

experimental (343)

Scientific Name of Source Organism

	Homo sapiens (138)
	Severe acute respiratory syndrome coronavirus 2 (98)
	Mus musculus (36)
	Oryctolagus cuniculus (18)
	Escherichia coli K-12 (10)
	synthetic construct (10)
	Influenza A virus (9)
	H3N2 subtype (8)
	H6N1 subtype (8)
	Influenza A virus (A/Shanghai/02/2013(H7N9)) (6)

More...

Taxonomy

	Eukaryota (224)
	Riboviria (167)
	Bacteria (40)
	other sequences (10)
	Archaea (5)
	Duplodnaviria (2)

Experimental Method

	X-RAY DIFFRACTION (217)
	ELECTRON MICROSCOPY (124)
	SOLUTION NMR (2)

Polymer Entity Type

	Protein (343)
	RNA (8)
	DNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (11)
	1.5 - 2.0 (47)
	2.0 - 2.5 (88)
	2.5 - 3.0 (104)
	3.0 - 3.5 (65)
	3.5 - 4.0 (15)
	4.0 - 4.5 (3)
	> 4.5 (8)

Release Date

	1990 - 1994 (2)
	1995 - 1999 (7)
	2000 - 2004 (25)
	2005 - 2009 (25)
	2010 - 2014 (45)
	2015 - 2019 (69)
	2020 - 2024 (170)

Enzyme Classification Name

	Hydrolases (96)
	Transferases (43)
	Oxidoreductases (14)
	Isomerases (9)
	Ligases (1)

Membrane Protein Annotation

	PDBTM (16)
	OPM (21)
	mpstruc (9)
	MemProtMD (9)

Symmetry Type

	Asymmetric (202)
	Cyclic (129)
	Dihedral (25)

SCOP Classification

	All beta proteins (108)
	Alpha and beta proteins (a/b) (26)
	Artifacts (23)
	Alpha and beta proteins (a+b) (41)
	Coiled coil proteins (25)
	All alpha proteins (8)

AllSelected

1 to 25 of 343 Structures

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1AFC \| pdb_00001afc	Download File View File

STRUCTURAL STUDIES OF THE BINDING OF THE ANTI-ULCER DRUG SUCROSE OCTASULFATE TO ACIDIC FIBROBLAST GROWTH FACTOR

Zhu, X., Hsu, B.T., Rees, D.C.

(1993) Structure 1: 27-34

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Bos taurus
Macromolecule	ACIDIC FIBROBLAST GROWTH FACTOR (protein)
Unique branched monosaccharides	GU4, YYJ

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1BAR \| pdb_00001bar	Download File View File

THREE-DIMENSIONAL STRUCTURES OF ACIDIC AND BASIC FIBROBLAST GROWTH FACTORS

Zhu, X., Komiya, H., Chirino, A., Faham, S., Fox, G.M., Arakawa, T., Hsu, B.T., Rees, D.C.

(1991) Science 251: 90-93

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Bos taurus
Macromolecule	ACIDIC FIBROBLAST GROWTH FACTOR (protein)

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1BSW \| pdb_00001bsw	Download File View File

ACUTOLYSIN A FROM SNAKE VENOM OF AGKISTRODON ACUTUS AT PH 7.5

Gong, W., Zhu, X., Liu, S., Teng, M., Niu, L.

(1998) J Mol Biology 283: 657-668

Released	1999-08-26
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Deinagkistrodon acutus
Macromolecule	PROTEIN (ACUTOLYSIN A) (protein)
Unique Ligands	CA, ZN

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1BUD \| pdb_00001bud	Download File View File

ACUTOLYSIN A FROM SNAKE VENOM OF AGKISTRODON ACUTUS AT PH 5.0

Gong, W., Zhu, X., Liu, S., Teng, M., Niu, L.

(1998) J Mol Biology 283: 657-668

Released	1999-09-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Deinagkistrodon acutus
Macromolecule	PROTEIN (ACUTOLYSIN A) (protein)
Unique Ligands	CA, ZN

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1CLK \| pdb_00001clk	Download File View File

CRYSTAL STRUCTURE OF STREPTOMYCES DIASTATICUS NO.7 STRAIN M1033 XYLOSE ISOMERASE AT 1.9 A RESOLUTION WITH PSEUDO-I222 SPACE GROUP

Niu, L., Teng, M., Zhu, X., Gong, W.

(2000) Acta Crystallogr D Biol Crystallogr 56: 129-136

Released	2000-05-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Streptomyces diastaticus
Macromolecule	XYLOSE ISOMERASE (protein)
Unique Ligands	CO, MG

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1DKX \| pdb_00001dkx	Download File View File

THE SUBSTRATE BINDING DOMAIN OF DNAK IN COMPLEX WITH A SUBSTRATE PEPTIDE, DETERMINED FROM TYPE 1 SELENOMETHIONYL CRYSTALS

Zhu, X., Zhao, X., Burkholder, W.F., Gragerov, A., Ogata, C.M., Gottesman, M.E., Hendrickson, W.A.

(1996) Science 272: 1606-1614

Released	1996-12-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	SUBSTRATE BINDING DOMAIN OF DNAK (protein) SUBSTRATE PEPTIDE (7 RESIDUES) (protein)

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1DKY \| pdb_00001dky	Download File View File

THE SUBSTRATE BINDING DOMAIN OF DNAK IN COMPLEX WITH A SUBSTRATE PEPTIDE, DETERMINED FROM TYPE 2 NATIVE CRYSTALS

Zhu, X., Zhao, X., Burkholder, W.F., Gragerov, A., Ogata, C.M., Gottesman, M.E., Hendrickson, W.A.

(1996) Science 272: 1606-1614

Released	1996-12-07
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli
Macromolecule	DNAK (protein) PEPTIDE SUBSTRATE (protein)

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1DKZ \| pdb_00001dkz	Download File View File

THE SUBSTRATE BINDING DOMAIN OF DNAK IN COMPLEX WITH A SUBSTRATE PEPTIDE, DETERMINED FROM TYPE 1 NATIVE CRYSTALS

Zhu, X., Zhao, X., Burkholder, W.F., Gragerov, A., Ogata, C.M., Gottesman, M.E., Hendrickson, W.A.

(1996) Science 272: 1606-1614

Released	1996-12-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	SUBSTRATE BINDING DOMAIN OF DNAK (protein) SUBSTRATE PEPTIDE (7 RESIDUES) (protein)

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1LZK \| pdb_00001lzk	Download File View File

BACTERIAL HEROIN ESTERASE COMPLEX WITH TRANSITION STATE ANALOG DIMETHYLARSENIC ACID

Zhu, X., Larsen, N.A., Basran, A., Bruce, N.C., Wilson, I.A.

(2003) J Biological Chem 278: 2008-2014

Released	2003-01-28
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Rhodococcus sp. (in: high G+C Gram-positive bacteria)
Macromolecule	HEROIN ESTERASE (protein)
Unique Ligands	CAC

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1LZL \| pdb_00001lzl	Download File View File

Bacterial Heroin Esterase

Zhu, X., Larsen, N.A., Basran, A., Bruce, N.C., Wilson, I.A.

(2003) J Biological Chem 278: 2008-2014

Released	2003-01-28
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Rhodococcus sp. (in: high G+C Gram-positive bacteria)
Macromolecule	HEROIN ESTERASE (protein)

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1MOZ \| pdb_00001moz	Download File View File

ADP-ribosylation factor-like 1 (ARL1) from Saccharomyces cerevisiae

Amor, J.C., Horton, J.R., Zhu, X., Wang, Y., Sullards, C., Ringe, D., Cheng, X., Kahn, R.A.

(2001) J Biological Chem 276: 42477-42484

Released	2002-10-09
Method	X-RAY DIFFRACTION 3.17 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	ADP-ribosylation factor-like protein 1 (protein)
Unique Ligands	GDP

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1MR3 \| pdb_00001mr3	Download File View File

Saccharomyces cerevisiae ADP-ribosylation Factor 2 (ScArf2) complexed with GDP-3'P at 1.6A resolution

Amor, J.-C., Horton, J.R., Zhu, X., Wang, Y., Sullards, C., Ringe, D., Cheng, X., Kahn, R.A.

(2001) J Biological Chem 276: 42477-42484

Released	2002-11-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	ADP-ribosylation factor 2 (protein)
Unique Ligands	EDO, EOH, G3D, GOL, MG, PDO

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1MRV \| pdb_00001mrv	Download File View File

crystal structure of an inactive Akt2 kinase domain

Huang, X., Begley, M., Morgenstern, K.A., Gu, Y., Rose, P., Zhao, H., Zhu, X.

(2003) Structure 11: 21-30

Released	2003-09-23
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	RAC-beta serine/threonine kinase (protein)

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1MRY \| pdb_00001mry	Download File View File

crystal structure of an inactive akt2 kinase domain

Huang, X., Begley, M., Morgenstern, K.A., Gu, Y., Rose, P., Zhao, H., Zhu, X.

(2003) Structure 11: 21-30

Released	2003-09-23
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	RAC-beta serine/threonine kinase (protein)

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1NCW \| pdb_00001ncw	Download File View File

Cationic Cyclization Antibody 4C6 in Complex with Benzoic Acid

Zhu, X., Wilson, I.A.

(2003) J Mol Biology 329: 69-83

Released	2003-05-13
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Mus musculus
Macromolecule	IMMUNOGLOBULIN IGG2A (protein)
Unique Ligands	BEZ, GOL

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1ND0 \| pdb_00001nd0	Download File View File

CATIONIC CYCLIZATION ANTIBODY 4C6 COMPLEX WITH TRANSITION STATE ANALOG

Zhu, X., Wilson, I.A.

(2003) J Mol Biology 329: 69-83

Released	2003-05-13
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Mus musculus
Macromolecule	IMMUNOGLOBULIN IGG2A (protein)
Unique Ligands	DP4, SO4

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1NJ9 \| pdb_00001nj9	Download File View File

Cocaine hydrolytic antibody 15A10

Larsen, N.A., de Prada, P., Deng, S.X., Zhu, X., Landry, D.W., Wilson, I.A.

(2004) Biochemistry 43: 8067-8076

Released	2004-02-17
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Mus musculus
Macromolecule	immunoglobulin heavy chain (protein) immunoglobulin variable chain (protein)
Unique Ligands	NA

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1QPC \| pdb_00001qpc	Download File View File

STRUCTURAL ANALYSIS OF THE LYMPHOCYTE-SPECIFIC KINASE LCK IN COMPLEX WITH NON-SELECTIVE AND SRC FAMILY SELECTIVE KINASE INHIBITORS

Zhu, X., Kim, J.L., Rose, P.E., Stover, D.R., Toledo, L.M., Zhao, H., Morgenstern, K.A.

(1999) Structure 7: 651-661

Released	2000-05-24
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase Lck (protein)
Unique Ligands	ANP, EDO, SO4

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1QPD \| pdb_00001qpd	Download File View File

STRUCTURAL ANALYSIS OF THE LYMPHOCYTE-SPECIFIC KINASE LCK IN COMPLEX WITH NON-SELECTIVE AND SRC FAMILY SELECTIVE KINASE INHIBITORS

Zhu, X., Kim, J.L., Rose, P.E., Stover, D.R., Toledo, L.M., Zhao, H., Morgenstern, K.A.

(1999) Structure 7: 651-661

Released	2000-05-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	LCK KINASE (protein)
Unique Ligands	SO4, STU

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1QPE \| pdb_00001qpe	Download File View File

STRUCTURAL ANALYSIS OF THE LYMPHOCYTE-SPECIFIC KINASE LCK IN COMPLEX WITH NON-SELECTIVE AND SRC FAMILY SELECTIVE KINASE INHIBITORS

Zhu, X., Morgenstern, K.A.

(1999) Structure 7: 651-661

Released	2000-05-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	LCK KINASE (protein)
Unique Ligands	PP2, SO4

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1QPJ \| pdb_00001qpj	Download File View File

CRYSTAL STRUCTURE OF THE LYMPHOCYTE-SPECIFIC KINASE LCK IN COMPLEX WITH STAUROSPORINE.

Zhu, X., Kim, J.L., Rose, P.E., Stover, D.R., Toledo, L.M.

(1999) Structure 7: 651-661

Released	2000-05-31
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	LCK TYROSINE KINASE (protein)
Unique Ligands	SO4, STU

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1QT1 \| pdb_00001qt1	Download File View File

CRYSTAL STRUCTURE OF XYLOSE ISOMERASE FROM STREPTOMYCES DIASTATICUS NO.7 M1033 AT 1.85 A RESOLUTION

Niu, L., Teng, M., Zhu, X.

(2000) Acta Crystallogr D Biol Crystallogr 56: 129-136

Released	2000-06-29
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Streptomyces diastaticus
Macromolecule	PROTEIN (XYLOSE ISOMERASE) (protein)
Unique Ligands	CO

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1QUA \| pdb_00001qua	Download File View File

CRYSTAL STRUCTURE OF ACUTOLYSIN-C, A HEMORRHAGIC TOXIN FROM THE SNAKE VENOM OF AGKISTRODON ACUTUS, AT 2.2 A RESOLUTION

Niu, L., Teng, M., Zhu, X.

(1999) Acta Crystallogr D Biol Crystallogr 55: 1834-1841

Released	2000-07-05
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Deinagkistrodon acutus
Macromolecule	ACUTOLYSIN-C (protein)
Unique Ligands	ZN

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1RU9 \| pdb_00001ru9	Download File View File

Crystal Structure (A) of u.v.-irradiated cationic cyclization antibody 4C6 Fab at pH 4.6 with a data set collected in-house.

Zhu, X., Wentworth Jr., P., Wentworth, A.D., Eschenmoser, A., Lerner, R.A., Wilson, I.A.

(2004) Proc Natl Acad Sci U S A 110: 2247-2252

Released	2004-03-02
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus
Macromolecule	immunoglobulin igg2a, heavy chain (protein) immunoglobulin igg2a, light chain (protein)
Unique Ligands	ACT, BEZ, GOL

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1RUA \| pdb_00001rua	Download File View File

Crystal structure (B) of u.v.-irradiated cationic cyclization antibody 4C6 fab at pH 4.6 with a data set collected at SSRL beamline 11-1.

Zhu, X., Wentworth Jr., P., Wentworth, A.D., Eschenmoser, A., Lerner, R.A., Wilson, I.A.

(2004) Proc Natl Acad Sci U S A 110: 2247-2252

Released	2004-03-02
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Mus musculus
Macromolecule	immunoglobulin igg2a, heavy chain (protein) immunoglobulin igg2a, light chain (protein)
Unique Ligands	ACT, BEZ, GOL

1 to 25 of 343 Structures

Page 1 of 14

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AFC | pdb_00001afc

1BAR | pdb_00001bar

1BSW | pdb_00001bsw

1BUD | pdb_00001bud

1CLK | pdb_00001clk

1DKX | pdb_00001dkx

1DKY | pdb_00001dky

1DKZ | pdb_00001dkz

1LZK | pdb_00001lzk

1LZL | pdb_00001lzl

1MOZ | pdb_00001moz

1MR3 | pdb_00001mr3

1MRV | pdb_00001mrv

1MRY | pdb_00001mry

1NCW | pdb_00001ncw

1ND0 | pdb_00001nd0

1NJ9 | pdb_00001nj9

1QPC | pdb_00001qpc

1QPD | pdb_00001qpd

1QPE | pdb_00001qpe

1QPJ | pdb_00001qpj

1QT1 | pdb_00001qt1

1QUA | pdb_00001qua

1RU9 | pdb_00001ru9

1RUA | pdb_00001rua