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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Picone, D."

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Search Summary

This query matches 39 Structures.

Refinements

Structure Determination Methodology

experimental (39)

Scientific Name of Source Organism

	Bos taurus (20)
	Saccharolobus solfataricus (12)
	Trematomus newnesi (2)
	Helicobacter pylori (1)
	Saimiriine herpesvirus 2 (1)

Taxonomy

	Eukaryota (22)
	Archaea (12)
	Bacteria (1)
	Duplodnaviria (1)

Experimental Method

X-RAY DIFFRACTION (39)

Polymer Entity Type

Protein (39)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (10)
	1.5 - 2.0 (14)
	2.0 - 2.5 (12)
	2.5 - 3.0 (2)

Release Date

	1995 - 1999 (6)
	2000 - 2004 (26)
	2005 - 2009 (6)
	2010 - 2014 (1)

Enzyme Classification Name

	Hydrolases (20)
	Lyases (20)
	Oxidoreductases (9)

Symmetry Type

	Asymmetric (22)
	Cyclic (12)
	Dihedral (6)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a+b) (21)
	All beta proteins (6)
	Alpha and beta proteins (a/b) (8)
	Designed proteins (4)
	Artifacts (1)
	All alpha proteins (3)

AllSelected

1 to 25 of 39 Structures

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11BA \| pdb_000011ba	Download File View File

BINDING OF A SUBSTRATE ANALOGUE TO A DOMAIN SWAPPING PROTEIN IN THE COMPLEX OF BOVINE SEMINAL RIBONUCLEASE WITH URIDYLYL-2',5'-ADENOSINE

Vitagliano, L., Adinolfi, S., Riccio, A., Sica, F., Zagari, A., Mazzarella, L.

(1998) Protein Sci 7: 1691-1699

Released	1999-03-26
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Bos taurus
Macromolecule	PROTEIN (RIBONUCLEASE, SEMINAL) (protein)
Unique Ligands	SO4, UPA

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11BG \| pdb_000011bg	Download File View File

A POTENTIAL ALLOSTERIC SUBSITE GENERATED BY DOMAIN SWAPPING IN BOVINE SEMINAL RIBONUCLEASE

Vitagliano, L., Adinolfi, S., Sica, F., Merlino, A., Zagari, A., Mazzarella, L.

(1999) J Mol Biology 293: 569-577

Released	1999-11-05
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bos taurus
Macromolecule	PROTEIN (BOVINE SEMINAL RIBONUCLEASE) (protein)
Unique Ligands	SO4, U2G

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1A3I \| pdb_00001a3i	Download File View File

X-RAY CRYSTALLOGRAPHIC DETERMINATION OF A COLLAGEN-LIKE PEPTIDE WITH THE REPEATING SEQUENCE (PRO-PRO-GLY)

Kramer, R.Z., Vitagliano, L., Bella, J., Berisio, R., Mazzarella, L., Brodsky, B., Zagari, A., Berman, H.M.

(1998) J Mol Biology 280: 623-638

Released	1998-05-06
Method	X-RAY DIFFRACTION 1.97 Å
Macromolecule	COLLAGEN-LIKE PEPTIDE (protein)
Unique Ligands	ACY

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1A3J \| pdb_00001a3j	Download File View File

X-RAY CRYSTALLOGRAPHIC DETERMINATION OF A COLLAGEN-LIKE PEPTIDE WITH THE REPEATING SEQUENCE (PRO-PRO-GLY)

Kramer, R.Z., Vitagliano, L., Bella, J., Berisio, R., Mazzarella, L., Brodsky, B., Zagari, A., Berman, H.M.

(1998) J Mol Biology 280: 623-638

Released	1998-05-06
Method	X-RAY DIFFRACTION 1.6 Å
Macromolecule	COLLAGEN-LIKE PEPTIDE (protein)

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1DY5 \| pdb_00001dy5	Download File View File

Deamidated derivative of bovine pancreatic ribonuclease

Esposito, L., Vitagliano, L., Sica, F., Zagari, A., Mazzarella, L.

(2000) J Mol Biology 297: 713

Released	2000-03-28
Method	X-RAY DIFFRACTION 0.87 Å
Organisms	Bos taurus
Macromolecule	RIBONUCLEASE A (protein)
Unique Ligands	ACT, IPA, SO4

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1EOS \| pdb_00001eos	Download File View File

CRYSTAL STRUCTURE OF RIBONUCLEASE A COMPLEXED WITH URIDYLYL(2',5')GUANOSINE (PRODUCTIVE BINDING)

Vitagliano, L., Merlino, A., Zagari, A., Mazzarella, L.

(2000) Protein Sci 9: 1217-1225

Released	2000-08-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus
Macromolecule	RIBONUCLEASE PANCREATIC (protein)
Unique Ligands	U2G

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1EOW \| pdb_00001eow	Download File View File

CRYSTAL STRUCTURE OF RIBONUCLEASE A COMPLEXED WITH URIDYLYL(2',5')GUANOSINE (NON-PRODUCTIVE BINDING)

Vitagliano, L., Merlino, A., Zagari, A., Mazzarella, L.

(2000) Protein Sci 9: 1217-1225

Released	2000-11-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus
Macromolecule	RIBONUCLEASE PANCREATIC (protein)
Unique Ligands	SO4, U2G

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1G9W \| pdb_00001g9w	Download File View File

STRUCTURAL BASIS OF COLLAGEN STABILIZATION INDUCED BY PROLINE HYDROXYLATION

Vitagliano, L., Berisio, R., Mazzarella, L., Zagari, A.

(2001) Biopolymers 58: 459-464

Released	2001-04-18
Method	X-RAY DIFFRACTION 1.3 Å
Macromolecule	COLLAGEN-LIKE PEPTIDE (protein)

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1JNY \| pdb_00001jny	Download File View File

Crystal structure of Sulfolobus solfataricus elongation factor 1 alpha in complex with GDP

Vitagliano, L., Masullo, M., Sica, F., Zagari, A., Bocchini, V.

(2001) EMBO J 20: 5305-5311

Released	2002-01-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Saccharolobus solfataricus
Macromolecule	Elongation factor 1-alpha (protein)
Unique Ligands	GDP

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1JVB \| pdb_00001jvb	Download File View File

ALCOHOL DEHYDROGENASE FROM THE ARCHAEON SULFOLOBUS SOLFATARICUS

Esposito, L., Sica, F., Zagari, A., Mazzarella, L.

(2002) J Mol Biology 318: 463-477

Released	2002-08-29
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Saccharolobus solfataricus
Macromolecule	NAD(H)-DEPENDENT ALCOHOL DEHYDROGENASE (protein)
Unique Ligands	ZN

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1JVT \| pdb_00001jvt	Download File View File

CRYSTAL STRUCTURE OF RIBONUCLEASE A (LIGAND-FREE FORM)

Vitagliano, L., Merlino, A., Zagari, A., Mazzarella, L.

(2002) Proteins 46: 97-104

Released	2002-06-05
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Bos taurus
Macromolecule	RIBONUCLEASE A (protein)

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1JVU \| pdb_00001jvu	Download File View File

CRYSTAL STRUCTURE OF RIBONUCLEASE A (COMPLEXED FORM)

Vitagliano, L., Merlino, A., Zagari, A., Mazzarella, L.

(2002) Proteins 46: 97-104

Released	2002-06-05
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Bos taurus
Macromolecule	RIBONUCLEASE A (protein)
Unique Ligands	C2P

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1JVV \| pdb_00001jvv	Download File View File

CRYSTAL STRUCTURE OF RIBONUCLEASE A (RETRO-SOAKED FORM)

Vitagliano, L., Merlino, A., Zagari, A., Mazzarella, L.

(2002) Proteins 46: 97-104

Released	2002-06-05
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bos taurus
Macromolecule	RIBONUCLEASE A (protein)

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1K6F \| pdb_00001k6f	Download File View File

Crystal Structure of the Collagen Triple Helix Model [(Pro-Pro-Gly)10]3

Berisio, R., Vitagliano, L., Mazzarella, L., Zagari, A.

(2002) Protein Sci 11: 262-270

Released	2002-01-30
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Saimiriine herpesvirus 2
Macromolecule	collagen triple helix (protein)

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1KF2 \| pdb_00001kf2	Download File View File

Atomic Resolution Structure of RNase A at pH 5.2

Berisio, R., Sica, F., Lamzin, V.S., Wilson, K.S., Zagari, A., Mazzarella, L.

(2002) Acta Crystallogr D Biol Crystallogr 58: 441-450

Released	2001-12-19
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Bos taurus
Macromolecule	pancreatic ribonuclease (protein)
Unique Ligands	SO4

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1KF3 \| pdb_00001kf3	Download File View File

Atomic Resolution Structure of RNase A at pH 5.9

Berisio, R., Sica, F., Lamzin, V.S., Wilson, K.S., Zagari, A., Mazzarella, L.

(2002) Acta Crystallogr D Biol Crystallogr 58: 441-450

Released	2001-12-19
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Bos taurus
Macromolecule	pancreatic ribonuclease (protein)
Unique Ligands	SO4

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1KF4 \| pdb_00001kf4	Download File View File

Atomic Resolution Structure of RNase A at pH 6.3

Berisio, R., Sica, F., Lamzin, V.S., Wilson, K.S., Zagari, A., Mazzarella, L.

(2002) Acta Crystallogr D Biol Crystallogr 58: 441-450

Released	2001-12-19
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Bos taurus
Macromolecule	pancreatic ribonuclease (protein)
Unique Ligands	SO4

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1KF5 \| pdb_00001kf5	Download File View File

Atomic Resolution Structure of RNase A at pH 7.1

Berisio, R., Sica, F., Lamzin, V.S., Wilson, K.S., Zagari, A., Mazzarella, L.

(2002) Acta Crystallogr D Biol Crystallogr 58: 441-450

Released	2001-12-19
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Bos taurus
Macromolecule	pancreatic ribonuclease (protein)

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1KF7 \| pdb_00001kf7	Download File View File

Atomic Resolution Structure of RNase A at pH 8.0

Berisio, R., Sica, F., Lamzin, V.S., Wilson, K.S., Zagari, A., Mazzarella, L.

(2002) Acta Crystallogr D Biol Crystallogr 58: 441-450

Released	2001-12-19
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Bos taurus
Macromolecule	pancreatic ribonuclease (protein)

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1KF8 \| pdb_00001kf8	Download File View File

Atomic resolution structure of RNase A at pH 8.8

Berisio, R., Sica, F., Lamzin, V.S., Wilson, K.S., Zagari, A., Mazzarella, L.

(2002) Acta Crystallogr D Biol Crystallogr 58: 441-450

Released	2001-12-19
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Bos taurus
Macromolecule	pancreatic ribonuclease (protein)

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1LA6 \| pdb_00001la6	Download File View File

The crystal structure of Trematomus newnesi hemoglobin in a partial hemichrome state

Riccio, A., Vitagliano, L., di Prisco, G., Zagari, A., Mazzarella, L.

(2002) Proc Natl Acad Sci U S A 99: 9801-9806

Released	2002-07-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Trematomus newnesi
Macromolecule	Hemoglobin alpha-1 chain (protein) Hemoglobin beta-1/2 chain (protein)
Unique Ligands	CMO, HEM

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1LSQ \| pdb_00001lsq	Download File View File

RIBONUCLEASE A WITH ASN 67 REPLACED BY A BETA-ASPARTYL RESIDUE

Esposito, L., Sica, F., Vitagliano, L., Zagari, A., Mazzarella, L.

(1996) J Mol Biology 257: 492-496

Released	1997-01-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bos taurus
Macromolecule	RIBONUCLEASE A (protein)
Unique Ligands	SO4

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1N1X \| pdb_00001n1x	Download File View File

Crystal Structure Analysis of the monomeric [S-carboxyamidomethyl-Cys31, S-carboxyamidomethyl-Cys32] Bovine seminal ribonuclease

Sica, F., Di Fiore, A., Zagari, A., Mazzarella, L.

(2003) Proteins 52: 263-271

Released	2003-08-26
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Bos taurus
Macromolecule	Ribonuclease, seminal (protein)

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1N3Z \| pdb_00001n3z	Download File View File

Crystal structure of the [S-carboxyamidomethyl-Cys31, S-carboxyamidomethyl-Cys32] monomeric derivative of the bovine seminal ribonuclease in the liganded state

Sica, F., Di Fiore, A., Zagari, A., Mazzarella, L.

(2003) Proteins 52: 263-271

Released	2003-08-26
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Bos taurus
Macromolecule	Ribonuclease, seminal (protein)
Unique Ligands	ADN, U3P

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1NTO \| pdb_00001nto	Download File View File

N249Y MUTANT OF ALCOHOL DEHYDROGENASE FROM THE ARCHAEON SULFOLOBUS SOLFATARICUS-MONOCLINIC CRYSTAL FORM

Esposito, L., Bruno, I., Sica, F., Raia, C.A., Giordano, A., Rossi, M., Mazzarella, L., Zagari, A.

(2003) FEBS Lett 539: 14-18

Released	2003-08-26
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Saccharolobus solfataricus
Macromolecule	NAD-dependent alcohol dehydrogenase (protein)
Unique Ligands	ZN

1 to 25 of 39 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

11BA | pdb_000011ba

11BG | pdb_000011bg

1A3I | pdb_00001a3i

1A3J | pdb_00001a3j

1DY5 | pdb_00001dy5

1EOS | pdb_00001eos

1EOW | pdb_00001eow

1G9W | pdb_00001g9w

1JNY | pdb_00001jny

1JVB | pdb_00001jvb

1JVT | pdb_00001jvt

1JVU | pdb_00001jvu

1JVV | pdb_00001jvv

1K6F | pdb_00001k6f

1KF2 | pdb_00001kf2

1KF3 | pdb_00001kf3

1KF4 | pdb_00001kf4

1KF5 | pdb_00001kf5

1KF7 | pdb_00001kf7

1KF8 | pdb_00001kf8

1LA6 | pdb_00001la6

1LSQ | pdb_00001lsq

1N1X | pdb_00001n1x

1N3Z | pdb_00001n3z

1NTO | pdb_00001nto