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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Peleg, Y."

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Search Summary

This query matches 36 Structures.

Refinements

Structure Determination Methodology

experimental (36)

Scientific Name of Source Organism

	Homo sapiens (11)
	Mus musculus (5)
	Burkholderia cepacia (4)
	Escherichia coli (3)
	Rattus norvegicus (3)
	Azotobacter vinelandii (2)
	Cryphonectria parasitica (2)
	Rattus (2)
	Ceratogyrus marshalli (1)
	Hordeum vulgare (1)

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Taxonomy

	Eukaryota (23)
	Bacteria (13)
	Archaea (2)

Experimental Method

	X-RAY DIFFRACTION (35)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (36)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (7)
	2.0 - 2.5 (15)
	2.5 - 3.0 (5)
	3.0 - 3.5 (3)
	3.5 - 4.0 (4)

Release Date

	1990 - 1994 (2)
	1995 - 1999 (6)
	2000 - 2004 (6)
	2005 - 2009 (7)
	2010 - 2014 (4)
	2015 - 2019 (1)
	2020 - 2024 (10)

Enzyme Classification Name

	Hydrolases (5)
	Lyases (5)
	Transferases (3)
	Oxidoreductases (2)

Membrane Protein Annotation

	OPM (4)
	MemProtMD (2)
	PDBTM (2)
	mpstruc (2)

Symmetry Type

	Asymmetric (19)
	Cyclic (14)
	Dihedral (6)

SCOP Classification

	All beta proteins (10)
	Alpha and beta proteins (a/b) (10)
	Alpha and beta proteins (a+b) (5)
	Membrane and cell surface proteins and peptides (2)
	Coiled coil proteins (1)
	Artifacts (2)
	Small proteins (2)

AllSelected

1 to 25 of 36 Structures

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1AIQ \| pdb_00001aiq	Download File View File

CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE R126E MUTANT

Strop, P., Montfort, W.R.

(1997) Protein Sci 6: 2504-2511

Released	1997-11-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli
Macromolecule	THYMIDYLATE SYNTHASE (protein)
Unique Ligands	CB3, UMP

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1AJM \| pdb_00001ajm	Download File View File

CRYSTAL STRUCTURE OF THYMIDYLATE SYNTHASE R126E MUTANT

Strop, P., Montfort, W.R.

(1997) Protein Sci 6: 2504-2511

Released	1997-11-12
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	THYMIDYLATE SYNTHASE (protein)

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1D7R \| pdb_00001d7r	Download File View File

CRYSTAL STRUCTURE OF THE COMPLEX OF 2,2-DIALKYLGLYCINE DECARBOXYLASE WITH 5PA

Malashkevich, V.N., Toney, M.D., Strop, P., Keller, J., Jansonius, J.N.

(1999) J Mol Biology 294: 193-200

Released	1999-11-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Burkholderia cepacia
Macromolecule	PROTEIN (2,2-DIALKYLGLYCINE DECARBOXYLASE (PYRUVATE)) (protein)
Unique Ligands	5PA, K, NA

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1D7S \| pdb_00001d7s	Download File View File

CRYSTAL STRUCTURE OF THE COMPLEX OF 2,2-DIALKYLGLYCINE DECARBOXYLASE WITH DCS

Malashkevich, V.N., Toney, M.D., Strop, P., Keller, J., Jansonius, J.N.

(1999) J Mol Biology 294: 193-200

Released	1999-11-19
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Burkholderia cepacia
Macromolecule	PROTEIN (2,2-DIALKYLGLYCINE DECARBOXYLASE (PYRUVATE)) (protein)
Unique Ligands	DCS, K, NA

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1D7U \| pdb_00001d7u	Download File View File

Crystal structure of the complex of 2,2-dialkylglycine decarboxylase with LCS

Malashkevich, V.N., Toney, M.D., Strop, P., Keller, J., Jansonius, J.N.

(1999) J Mol Biology 294: 193-200

Released	1999-11-19
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Burkholderia cepacia
Macromolecule	PROTEIN (2,2-DIALKYLGLYCINE DECARBOXYLASE (PYRUVATE)) (protein)
Unique Ligands	K, LCS, NA

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1D7V \| pdb_00001d7v	Download File View File

CRYSTAL STRUCTURE OF THE COMPLEX OF 2,2-DIALKYLGLYCINE DECARBOXYLASE WITH NMA

Malashkevich, V.N., Toney, M.D., Strop, P., Keller, J., Jansonius, J.N.

(1999) J Mol Biology 294: 193-200

Released	1999-11-19
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Burkholderia cepacia
Macromolecule	PROTEIN (2,2-DIALKYLGLYCINE DECARBOXYLASE (PYRUVATE)) (protein)
Unique Ligands	K, NA, NMA

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1EM7 \| pdb_00001em7	Download File View File

HELIX VARIANT OF THE B1 DOMAIN FROM STREPTOCOCCAL PROTEIN G

Strop, P., Marinescu, A.M., Mayo, S.L.

(2000) Protein Sci 9: 1391-1394

Released	2002-05-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptococcus sp.
Macromolecule	PROTEIN G (protein)

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1EPL \| pdb_00001epl	Download File View File

A STRUCTURAL COMPARISON OF 21 INHIBITOR COMPLEXES OF THE ASPARTIC PROTEINASE FROM ENDOTHIA PARASITICA

Al-Karadaghi, S., Cooper, J.B., Strop, P., Blundell, T.L.

(1994) Protein Sci 3: 2129-2143

Released	1994-12-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Cryphonectria parasitica
Macromolecule	ENDOTHIAPEPSIN (protein) PS1, PRO-LEU-GLU-PSA-ARG-LEU (protein)

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1EPM \| pdb_00001epm	Download File View File

A STRUCTURAL COMPARISON OF 21 INHIBITOR COMPLEXES OF THE ASPARTIC PROTEINASE FROM ENDOTHIA PARASITICA

Crawford, M., Cooper, J.B., Strop, P., Blundell, T.L.

(1994) Protein Sci 3: 2129-2143

Released	1994-12-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Cryphonectria parasitica
Macromolecule	ENDOTHIAPEPSIN (protein) PS2, THR-PHE-GLN-ALA-PSA-LEU-ARG-GLU (protein)
Unique Ligands	SO4

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1G1M \| pdb_00001g1m	Download File View File

ALL-FERROUS NITROGENASE IRON PROTEIN FROM AZOTOBACTER VINELANDII

Strop, P., Takahara, P.M., Chiu, H.-J., Angove, H.C., Burgess, B.K., Rees, D.C.

(2001) Biochemistry 40: 651-656

Released	2001-01-31
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Azotobacter vinelandii
Macromolecule	NITROGENASE IRON PROTEIN (protein)
Unique Ligands	SF4

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1G5C \| pdb_00001g5c	Download File View File

CRYSTAL STRUCTURE OF THE 'CAB' TYPE BETA CLASS CARBONIC ANHYDRASE FROM METHANOBACTERIUM THERMOAUTOTROPHICUM

Strop, P., Smith, K.S., Iverson, T.M., Ferry, J.G., Rees, D.C.

(2001) J Biological Chem 276: 10299-10305

Released	2001-04-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	BETA-CARBONIC ANHYDRASE (protein)
Unique Ligands	CA, EPE, ZN

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1G5P \| pdb_00001g5p	Download File View File

NITROGENASE IRON PROTEIN FROM AZOTOBACTER VINELANDII

Strop, P., Takahara, P.M., Chiu, H.J., Angove, H.C., Burgess, B.K., Rees, D.C.

(2001) Biochemistry 40: 651-656

Released	2001-01-31
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Azotobacter vinelandii
Macromolecule	NITROGENASE IRON PROTEIN (protein)
Unique Ligands	SF4

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1QCV \| pdb_00001qcv	Download File View File

RUBREDOXIN VARIANT (PFRD-XC4) FOLDS WITHOUT IRON

Strop, P., Mayo, S.L.

(2000) Biochemistry 39: 1251-1255

Released	2000-02-18
Method	SOLUTION NMR
Organisms	Pyrococcus furiosus
Macromolecule	PROTEIN (RUBREDOXIN VARIANT PFRD-XC4) (protein)

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1XFD \| pdb_00001xfd	Download File View File

Structure of a human A-type Potassium Channel Accelerating factor DPPX, a member of the dipeptidyl aminopeptidase family

Strop, P., Bankovich, A.J., Hansen, K.C., Garcia, K.C., Brunger, A.T.

(2004) J Mol Biology 343: 1055-1065

Released	2004-10-26
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Dipeptidyl aminopeptidase-like protein 6 (protein)
Unique branched monosaccharides	BMA, MAN, NAG, NDG

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2FO5 \| pdb_00002fo5	Download File View File

Crystal structure of recombinant barley cysteine endoprotease B isoform 2 (EP-B2) in complex with leupeptin

Bethune, M.T., Strop, P., Brunger, A.T., Khosla, C.

(2006) Chem Biol 13: 637-647

Released	2006-07-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Hordeum vulgare Streptomyces roseus
Macromolecule	ACE-LEU-LEU-argininal (leupeptin) (protein) Cysteine proteinase EP-B 2 (protein)
Unique Ligands	SO4

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2OAR \| pdb_00002oar	Download File View File

Mechanosensitive Channel of Large Conductance (MscL)

Rees, D.C., Chang, G., Spencer, R.H., Lee, A.T., Steinbacher, S., Strop, P.

(2007) Current Topics In Membranes 58:

Released	2007-01-09
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Mycobacterium tuberculosis H37Ra
Macromolecule	Large-conductance mechanosensitive channel (protein)
Unique Ligands	AU

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2OAU \| pdb_00002oau	Download File View File

Mechanosensitive Channel of Small Conductance (MscS)

Rees, D.C., Bass, R.B., Steinbacher, S., Strop, P., Barclay, M.T.

(2007) Current Topics In Membranes 58:

Released	2007-01-09
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Escherichia coli
Macromolecule	Small-conductance mechanosensitive channel (protein)

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2Q3Z \| pdb_00002q3z	Download File View File

Transglutaminase 2 undergoes large conformational change upon activation

Strop, P., Pinkas, D.M., Brunger, A.T., Khosla, C.

(2007) PLoS Biol 5: e327-e327

Released	2007-10-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Polypeptide (protein) Transglutaminase 2 (protein)
Unique Ligands	SO4

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3B5N \| pdb_00003b5n	Download File View File

Structure of the yeast plasma membrane SNARE complex

Strop, P., Brunger, A.T.

(2008) J Biological Chem 283: 1113-1119

Released	2007-11-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Protein SSO1 (protein) Protein transport protein SEC9 (protein) Synaptobrevin homolog 1 (protein)

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3BIW \| pdb_00003biw	Download File View File

Crystal structure of the Neuroligin-1/Neurexin-1beta synaptic adhesion complex

Arac, D., Boucard, A.A., Ozkan, E., Strop, P., Newell, E., Sudhof, T.C., Brunger, A.T.

(2007) Neuron 56: 992-1003

Released	2007-12-18
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Rattus norvegicus
Macromolecule	Neurexin-1-beta (protein) Neuroligin-1 (protein)
Unique Ligands	CA, NAG
Unique branched monosaccharides	NAG

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3BIX \| pdb_00003bix	Download File View File

Crystal structure of the extracellular esterase domain of Neuroligin-1

Arac, D., Boucard, A.A., Ozkan, E., Strop, P., Newell, E., Sudhof, T.C., Brunger, A.T.

(2007) Neuron 56: 992-1003

Released	2007-12-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Rattus norvegicus
Macromolecule	Neuroligin-1 (protein)
Unique Ligands	EDO, NAG, NI

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3HN8 \| pdb_00003hn8	Download File View File

Crystal structure of synaptotagmin

Strop, P., Vrljic, M., Ernst, J., Brunger, A.T.

(2010) Nat Struct Mol Biol 17: 325-331

Released	2010-02-23
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Rattus norvegicus
Macromolecule	Synaptotagmin-3 (protein)
Unique Ligands	CA, ZN

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3SQO \| pdb_00003sqo	Download File View File

PCSK9 J16 Fab complex

Strop, P.

(2012) J Pharmacol Exp Ther 340: 228-236

Released	2012-05-16
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	J16 Heavy chain (protein) J16 Light chain (protein) PCSK9 prodomain (protein) Proprotein convertase subtilisin/kexin type 9 (protein)

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4DZ8 \| pdb_00004dz8	Download File View File

human IgG1 Fc fragment Heterodimer

Strop, P.

(2012) J Mol Biology 420: 204-219

Released	2012-08-01
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Homo sapiens
Macromolecule	Ig gamma-1 chain C region (protein)
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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4IDJ \| pdb_00004idj	Download File View File

S.Aureus a-hemolysin monomer in complex with Fab

Strop, P.

(2013) J Mol Biology 425: 1641-1654

Released	2013-06-26
Method	X-RAY DIFFRACTION 3.36 Å
Organisms	Homo sapiens Staphylococcus aureus
Macromolecule	Alpha-hemolysin (protein) Fab Heavy chain (protein) Fab Light chain (protein)
Unique Ligands	SO4

1 to 25 of 36 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AIQ | pdb_00001aiq

1AJM | pdb_00001ajm

1D7R | pdb_00001d7r

1D7S | pdb_00001d7s

1D7U | pdb_00001d7u

1D7V | pdb_00001d7v

1EM7 | pdb_00001em7

1EPL | pdb_00001epl

1EPM | pdb_00001epm

1G1M | pdb_00001g1m

1G5C | pdb_00001g5c

1G5P | pdb_00001g5p

1QCV | pdb_00001qcv

1XFD | pdb_00001xfd

2FO5 | pdb_00002fo5

2OAR | pdb_00002oar

2OAU | pdb_00002oau

2Q3Z | pdb_00002q3z

3B5N | pdb_00003b5n

3BIW | pdb_00003biw

3BIX | pdb_00003bix

3HN8 | pdb_00003hn8

3SQO | pdb_00003sqo

4DZ8 | pdb_00004dz8

4IDJ | pdb_00004idj