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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Pai, E.F."

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Search Summary

This query matches 306 Structures.

Refinements

Structure Determination Methodology

experimental (306)

Scientific Name of Source Organism

	Homo sapiens (97)
	Methanothermobacter thermautotrophicus (34)
	Rhodopseudomonas palustris (29)
	Bos taurus (19)
	Methanothermobacter thermautotrophicus str. Delta H (15)
	Human immunodeficiency virus 1 (14)
	Rhodopseudomonas palustris CGA009 (14)
	Pseudomonas aeruginosa (11)
	Plasmodium falciparum 3D7 (9)
	Staphylococcus aureus (8)

More...

Taxonomy

	Eukaryota (151)
	Bacteria (98)
	Archaea (57)
	Riboviria (14)
	Riboviria (RNA viruses and viroids) (3)
	Duplodnaviria (2)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (306)

Polymer Entity Type

Protein (306)

Refinement Resolution (Å)

	1.0 - 1.5 (18)
	1.5 - 2.0 (149)
	2.0 - 2.5 (91)
	2.5 - 3.0 (34)
	3.0 - 3.5 (8)
	3.5 - 4.0 (5)
	4.0 - 4.5 (1)

Release Date

	1990 - 1994 (12)
	1995 - 1999 (17)
	2000 - 2004 (55)
	2005 - 2009 (63)
	2010 - 2014 (102)
	2015 - 2019 (57)

Enzyme Classification Name

	Hydrolases (81)
	Transferases (52)
	Oxidoreductases (35)
	Lyases (68)
	Isomerases (3)

Membrane Protein Annotation

	MemProtMD (6)
	PDBTM (6)
	mpstruc (5)
	OPM (2)

Symmetry Type

	Cyclic (196)
	Asymmetric (105)
	Dihedral (27)
	Tetrahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (145)
	All beta proteins (46)
	Alpha and beta proteins (a+b) (33)
	Artifacts (33)
	All alpha proteins (16)
	Membrane and cell surface proteins and peptides (3)
	Small proteins (1)

AllSelected

1 to 25 of 306 Structures

Page 1 of 13

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121P \| pdb_0000121p	Download File View File

STRUKTUR UND GUANOSINTRIPHOSPHAT-HYDROLYSEMECHANISMUS DES C-TERMINAL VERKUERZTEN MENSCHLICHEN KREBSPROTEINS P21-H-RAS

Krengel, U., Scheffzek, K., Scherer, A., Kabsch, W., Wittinghofer, A., Pai, E.F.

(1991) Thesis

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Homo sapiens
Macromolecule	H-RAS P21 PROTEIN (protein)
Unique Ligands	GCP, MG

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1AV7 \| pdb_00001av7	Download File View File

SUBTILISIN CARLSBERG L-NAPHTHYL-1-ACETAMIDO BORONIC ACID INHIBITOR COMPLEX

Stoll, V.S., Eger, B.T., Hynes, R.C., Martichonok, V., Jones, J.B., Pai, E.F.

(1998) Biochemistry 37: 451-462

Released	1998-04-01
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bacillus licheniformis
Macromolecule	SUBTILISIN CARLSBERG, TYPE VIII (protein)
Unique Ligands	NA

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1AVT \| pdb_00001avt	Download File View File

SUBTILISIN CARLSBERG D-PARA-CHLOROPHENYL-1-ACETAMIDO BORONIC ACID INHIBITOR COMPLEX

Stoll, V.S., Eger, B.T., Hynes, R.C., Martichonok, V., Jones, J.B., Pai, E.F.

(1998) Biochemistry 37: 451-462

Released	1998-03-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus licheniformis
Macromolecule	SUBTILISIN CARLSBERG, TYPE VIII (protein)
Unique Ligands	NA

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1DV7 \| pdb_00001dv7	Download File View File

CRYSTAL STRUCTURE OF OROTIDINE MONOPHOSPHATE DECARBOXYLASE

Wu, N., Mo, Y., Gao, J., Pai, E.F.

(2000) Proc Natl Acad Sci U S A 97: 2017-2022

Released	2000-04-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)

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1DVJ \| pdb_00001dvj	Download File View File

CRYSTAL STRUCTURE OF OROTIDINE MONOPHOSPHATE DECARBOXYLASE COMPLEXED WITH 6-AZAUMP

Wu, N., Mo, Y., Gao, J., Pai, E.F.

(2000) Proc Natl Acad Sci U S A 97: 2017-2022

Released	2000-04-05
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	UP6

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1E2A \| pdb_00001e2a	Download File View File

ENZYME IIA FROM THE LACTOSE SPECIFIC PTS FROM LACTOCOCCUS LACTIS

Sliz, P., Engelmann, R., Hengstenberg, W., Pai, E.F.

(1997) Structure 5: 775-788

Released	1998-04-29
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Lactococcus lactis
Macromolecule	ENZYME IIA (protein)
Unique Ligands	MG

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1EJ2 \| pdb_00001ej2	Download File View File

Crystal structure of methanobacterium thermoautotrophicum nicotinamide mononucleotide adenylyltransferase with bound NAD+

Saridakis, V., Christendat, D., Kimber, M.S., Edwards, A.M., Pai, E.F., Midwest Center for Structural Genomics (MCSG), Northeast Structural Genomics Consortium (NESG)

(2001) J Biological Chem 276: 7225-7232

Released	2001-03-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	NICOTINAMIDE MONONUCLEOTIDE ADENYLYLTRANSFERASE (protein)
Unique Ligands	NA, NAD, SO4

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1EKJ \| pdb_00001ekj	Download File View File

THE X-RAY CRYSTALLOGRAPHIC STRUCTURE OF BETA CARBONIC ANHYDRASE FROM THE C3 DICOT PISUM SATIVUM

Kimber, M.S., Pai, E.F.

(2000) EMBO J 19: 1407-1418

Released	2000-06-07
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Pisum sativum
Macromolecule	BETA-CARBONIC ANHYDRASE (protein)
Unique Ligands	ACT, AZI, CIT, CL, CU, EDO, ZN

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1EP0 \| pdb_00001ep0	Download File View File

HIGH RESOLUTION CRYSTAL STRUCTURE OF DTDP-6-DEOXY-D-XYLO-4-HEXULOSE 3,5-EPIMERASE FROM METHANOBACTERIUM THERMOAUTOTROPHICUM

Christendat, D., Saridakis, V., Bochkarev, A., Pai, E.F., Arrowsmith, C.H., Edwards, A.M., Northeast Structural Genomics Consortium (NESG)

(2000) J Biological Chem 275: 24608-24612

Released	2000-12-13
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	DTDP-6-DEOXY-D-XYLO-4-HEXULOSE 3,5-EPIMERASE (protein)

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1EPZ \| pdb_00001epz	Download File View File

CRYSTAL STRUCTURE OF DTDP-6-DEOXY-D-XYLO-4-HEXULOASE 3,5-EPIMERASE FROM METHANOBACTERIUM THERMOAUTOTROPHICUM WITH BOUND LIGAND.

Christendat, D., Saridakis, V., Bochkarev, A., Pai, E.F., Arrowsmith, C., Edwards, A.M.

(2000) J Biological Chem 275: 24608-24612

Released	2000-12-13
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	DTDP-6-DEOXY-D-XYLO-4-HEXULOSE 3,5-EPIMERASE (protein)
Unique Ligands	TYD

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1F1W \| pdb_00001f1w	Download File View File

SRC SH2 THREF1TRP MUTANT COMPLEXED WITH THE PHOSPHOPEPTIDE S(PTR)VNVQN

Kimber, M.S., Nachman, J., Cunningham, A.M., Gish, G.D., Pawson, T., Pai, E.F.

(2000) Mol Cell 5: 1043-1049

Released	2000-07-06
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Gallus gallus
Macromolecule	PROTO-ONCOGENE TYROSINE-PROTEIN KINASE SRC (protein) S(PTR)VNVQN PHOSPHOPEPTIDE (protein)

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1F2F \| pdb_00001f2f	Download File View File

SRC SH2 THREF1TRP MUTANT

Kimber, M.S., Nachman, J., Cunningham, A.M., Gish, G.D., Pawson, T., Pai, E.F.

(2000) Mol Cell 5: 1043-1049

Released	2000-07-06
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Gallus gallus
Macromolecule	PROTO-ONCOGENE TYROSINE-PROTEIN KINASE SRC (protein)
Unique Ligands	PO4

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1FIQ \| pdb_00001fiq	Download File View File

CRYSTAL STRUCTURE OF XANTHINE OXIDASE FROM BOVINE MILK

Enroth, C., Eger, B.T., Okamoto, K., Nishino, T., Nishino, T., Pai, E.F.

(2000) Proc Natl Acad Sci U S A 97: 10723-10728

Released	2000-10-04
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bos taurus
Macromolecule	XANTHINE OXIDASE (protein)
Unique Ligands	FAD, FES, GOL, MOS, MTE, SAL

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1FO4 \| pdb_00001fo4	Download File View File

CRYSTAL STRUCTURE OF XANTHINE DEHYDROGENASE ISOLATED FROM BOVINE MILK

Enroth, C., Eger, B.T., Okamoto, K., Nishino, T., Nishino, T., Pai, E.F.

(2000) Proc Natl Acad Sci U S A 97: 10723-10728

Released	2000-10-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bos taurus
Macromolecule	XANTHINE DEHYDROGENASE (protein)
Unique Ligands	CA, FAD, FES, GOL, MOS, MTE, SAL

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1GNP \| pdb_00001gnp	Download File View File

X-RAY CRYSTAL STRUCTURE ANALYSIS OF THE CATALYTIC DOMAIN OF THE ONCOGENE PRODUCT P21H-RAS COMPLEXED WITH CAGED GTP AND MANT DGPPNHP

Scheidig, A., Franken, S.M., Corrie, J.E.T., Reid, G.P., Wittinghofer, A., Pai, E.F., Goody, R.S.

(1995) J Mol Biology 253: 132-150

Released	1995-07-31
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	C-H-RAS P21 PROTEIN (protein)
Unique Ligands	AGN, MG

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1GNQ \| pdb_00001gnq	Download File View File

X-RAY CRYSTAL STRUCTURE ANALYSIS OF THE CATALYTIC DOMAIN OF THE ONCOGENE PRODUCT P21H-RAS COMPLEXED WITH CAGED GTP AND MANT DGPPNHP

Scheidig, A., Franken, S.M., Corrie, J.E.T., Reid, G.P., Wittinghofer, A., Pai, E.F., Goody, R.S.

(1995) J Mol Biology 253: 132-150

Released	1995-07-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	C-H-RAS P21 PROTEIN (protein)
Unique Ligands	CAG, MG

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1GNR \| pdb_00001gnr	Download File View File

X-RAY CRYSTAL STRUCTURE ANALYSIS OF THE CATALYTIC DOMAIN OF THE ONCOGENE PRODUCT P21H-RAS COMPLEXED WITH CAGED GTP AND MANT DGPPNHP

Scheidig, A., Franken, S.M., Corrie, J.E.T., Reid, G.P., Wittinghofer, A., Pai, E.F., Goody, R.S.

(1995) J Mol Biology 253: 132-150

Released	1995-07-31
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	C-H-RAS P21 PROTEIN (protein)
Unique Ligands	CAG, MG

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1GRT \| pdb_00001grt	Download File View File

HUMAN GLUTATHIONE REDUCTASE A34E/R37W MUTANT

Stoll, V.S., Simpson, S.J., Krauth-Siegel, R.L., Walsh, C.T., Pai, E.F.

(1997) Biochemistry 36: 6437-6447

Released	1997-06-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	GLUTATHIONE REDUCTASE (protein)
Unique Ligands	FAD

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1HYB \| pdb_00001hyb	Download File View File

CRYSTAL STRUCTURE OF AN ACTIVE SITE MUTANT OF METHANOBACTERIUM THERMOAUTOTROPHICUM NICOTINAMIDE MONONUCLEOTIDE ADENYLYLTRANSFERASE

Saridakis, V., Christendat, D., Kimber, M.S., Edwards, A.M., Pai, E.F.

(2001) J Biological Chem 276: 7225-7232

Released	2001-03-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	NICOTINAMIDE MONONUCLEOTIDE ADENYLYLTRANSFERASE (protein)
Unique Ligands	NMN, SO4

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1J70 \| pdb_00001j70	Download File View File

CRYSTAL STRUCTURE OF YEAST ATP SULFURYLASE

Lalor, D.J., Schnyder, T., Saridakis, V., Pilloff, D.E., Dong, A., Tang, H., Leyh, T.S., Pai, E.F.

(2003) Protein Eng 16: 1071-1079

Released	2003-06-17
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	ATP SULPHURYLASE (protein)
Unique Ligands	NA, PO4

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1KLY \| pdb_00001kly	Download File View File

Orotidine monophosphate decarboxylase D70G mutant complexed with 6-azaUMP

Wu, N., Gillon, W., Pai, E.F.

(2002) Biochemistry 41: 4002-4011

Released	2002-06-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	UP6

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1KLZ \| pdb_00001klz	Download File View File

Crystal structure of orotidine monophosphate decarboxylase mutant D70A complexed with UMP

Wu, N., Gillon, W., Pai, E.F.

(2002) Biochemistry 41: 4002-4011

Released	2002-06-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	CL, U5P

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1KM0 \| pdb_00001km0	Download File View File

Crystal structure of orotidine monophosphate decarboxylase mutant D70N complexed with 6-azaUMP

Wu, N., Gillon, W., Pai, E.F.

(2002) Biochemistry 41: 4002-4011

Released	2002-06-28
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	UP6

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1KM1 \| pdb_00001km1	Download File View File

Orotidine monophosphate decarboxylase mutant S127A crystal structure

Wu, N., Gillon, W., Pai, E.F.

(2002) Biochemistry 41: 4002-4011

Released	2002-06-28
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	UP6

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1KM2 \| pdb_00001km2	Download File View File

crystal structure of orotidine monophosphate mutant Q185A with 6-azaUMP

Wu, N., Gillon, W., Pai, E.F.

(2002) Biochemistry 41: 4002-4011

Released	2002-06-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	OROTIDINE 5'-PHOSPHATE DECARBOXYLASE (protein)
Unique Ligands	UP6

1 to 25 of 306 Structures

Page 1 of 13

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

121P | pdb_0000121p

1AV7 | pdb_00001av7

1AVT | pdb_00001avt

1DV7 | pdb_00001dv7

1DVJ | pdb_00001dvj

1E2A | pdb_00001e2a

1EJ2 | pdb_00001ej2

1EKJ | pdb_00001ekj

1EP0 | pdb_00001ep0

1EPZ | pdb_00001epz

1F1W | pdb_00001f1w

1F2F | pdb_00001f2f

1FIQ | pdb_00001fiq

1FO4 | pdb_00001fo4

1GNP | pdb_00001gnp

1GNQ | pdb_00001gnq

1GNR | pdb_00001gnr

1GRT | pdb_00001grt

1HYB | pdb_00001hyb

1J70 | pdb_00001j70

1KLY | pdb_00001kly

1KLZ | pdb_00001klz

1KM0 | pdb_00001km0

1KM1 | pdb_00001km1

1KM2 | pdb_00001km2