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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Kaptan, S.S."

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Fischerella ambigua UTEX 1903 (5)
	Aspergillus novofumigatus IBT 16806 (3)
	Neisseria meningitidis (2)
	Streptomyces albidoflavus (2)
	Streptomyces tsukubensis (2)

Taxonomy

	Bacteria (11)
	Eukaryota (3)

Experimental Method

	X-RAY DIFFRACTION (13)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (14)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (7)
	2.5 - 3.0 (2)
	3.0 - 3.5 (1)

Release Date

	2015 - 2019 (5)
	2020 - 2024 (9)

Enzyme Classification Name

Oxidoreductases (3)

Symmetry Type

	Asymmetric (11)
	Dihedral (2)
	Cyclic (1)

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1 to 14 of 14 Structures

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5YK9 \| pdb_00005yk9	Download File View File

Crystal structure of selenomethionine-labelled indole prenyltransferase AmbP1

Awakawa, T., Nakashima, Y., Liu, X., Abe, I.

(2018) Angew Chem Int Ed Engl 57: 6810-6813

Released	2018-06-06
Method	X-RAY DIFFRACTION 3.001 Å
Organisms	Fischerella ambigua UTEX 1903
Macromolecule	AmbP1 (protein)

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5Z43 \| pdb_00005z43	Download File View File

Crystal structure of prenyltransferase AmbP1 apo structure

Awakawa, T., Nakashima, Y., Mori, T., Abe, I.

(2018) Angew Chem Int Ed Engl 57: 6810-6813

Released	2018-06-06
Method	X-RAY DIFFRACTION 2.361 Å
Organisms	Fischerella ambigua UTEX 1903
Macromolecule	AmbP1 (protein)
Unique Ligands	MG

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5Z44 \| pdb_00005z44	Download File View File

Crystal structure of prenyltransferase AmbP1 complexed with GSPP

Awakawa, T., Nakashima, Y., Mori, T., Abe, I.

(2018) Angew Chem Int Ed Engl 57: 6810-6813

Released	2018-06-06
Method	X-RAY DIFFRACTION 2.458 Å
Organisms	Fischerella ambigua UTEX 1903
Macromolecule	AmbP1 (protein)
Unique Ligands	GST, MG

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5Z45 \| pdb_00005z45	Download File View File

Crystal structure of prenyltransferase AmbP1 pH6.5 complexed with GSPP and cis-indolyl vinyl isonitrile

Awakawa, T., Nakashima, Y., Mori, T., Abe, I.

(2018) Angew Chem Int Ed Engl 57: 6810-6813

Released	2018-06-06
Method	X-RAY DIFFRACTION 2.601 Å
Organisms	Fischerella ambigua UTEX 1903
Macromolecule	AmbP1 (protein)
Unique Ligands	8XL, GST, MG

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5Z46 \| pdb_00005z46	Download File View File

Crystal structure of prenyltransferase AmbP1 pH8 complexed with GSPP and cis-indolyl vinyl isonitrile

Awakawa, T., Nakashima, Y., Mori, T., Abe, I.

(2018) Angew Chem Int Ed Engl 57: 6810-6813

Released	2018-06-06
Method	X-RAY DIFFRACTION 1.999 Å
Organisms	Fischerella ambigua UTEX 1903
Macromolecule	AmbP1 (protein)
Unique Ligands	8XL, GST, MG

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6KSU \| pdb_00006ksu	Download File View File

Crystal structure of SurE

Zhai, R., Mori, T., Abe, I.

(2020) Nat Catal

Released	2020-06-24
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Streptomyces albidoflavus
Macromolecule	Alpha/beta hydrolase (protein)
Unique Ligands	MLI, SO4, YT3

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6KSV \| pdb_00006ksv	Download File View File

Crystal structure of SurE with D-Leu

Zhai, R., Mori, T., Abe, I.

(2020) Nat Catal

Released	2020-06-24
Method	X-RAY DIFFRACTION 2.42 Å
Organisms	Streptomyces albidoflavus
Macromolecule	Alpha/beta hydrolase (protein)
Unique Ligands	DLE, E7L, SO4, YT3

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7DE2 \| pdb_00007de2	Download File View File

iron and alpha-ketoglutarate-dependent endoperoxidase NvfI

Zhai, R., Mori, T., Abe, I.

(2021) Nat Commun 12: 4417-4417

Released	2021-07-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Aspergillus novofumigatus IBT 16806
Macromolecule	NvfI (protein)
Unique Ligands	AKG, FE, H3X

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7EMZ \| pdb_00007emz	Download File View File

iron and alpha-ketoglutarate-dependent endoperoxidase NvfI W199F variant

Mori, T., Abe, I.

(2021) Nat Commun 12: 4417-4417

Released	2021-07-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Aspergillus novofumigatus IBT 16806
Macromolecule	NvfI W199F (protein)
Unique Ligands	FE, H3X, OGA