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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Iwai, K."

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Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

	Mus musculus (7)
	Homo sapiens (6)
	Shigella flexneri 5a str. M90T (2)

Taxonomy

	Eukaryota (9)
	Bacteria (2)

Experimental Method

X-RAY DIFFRACTION (11)

Polymer Entity Type

Protein (11)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (3)
	2.0 - 2.5 (4)
	2.5 - 3.0 (1)
	3.0 - 3.5 (1)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (2)
	2010 - 2014 (3)
	2015 - 2019 (2)
	2020 - 2024 (2)

Enzyme Classification Name

	Transferases (6)
	Hydrolases (2)
	Ligases (3)

Symmetry Type

Asymmetric (11)

SCOP Classification

	Alpha and beta proteins (a+b) (4)
	Alpha and beta proteins (a/b) (2)
	Artifacts (3)
	All beta proteins (2)
	All alpha proteins (1)

AllSelected

1 to 11 of 11 Structures

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1UMH \| pdb_00001umh	Download File View File

Structural basis of sugar-recognizing ubiquitin ligase

Mizushima, T., Hirao, T., Yoshida, Y., Lee, S.J., Chiba, T., Iwai, K., Yamaguchi, Y., Kato, K., Tsukihara, T., Tanaka, K., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) Nat Struct Mol Biol 11: 365-370

Released	2004-04-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	F-box only protein 2 (protein)
Unique Ligands	NI

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1UMI \| pdb_00001umi	Download File View File

Structural basis of sugar-recognizing ubiquitin ligase

Mizushima, T., Hirao, T., Yoshida, Y., Lee, S.J., Chiba, T., Iwai, K., Yamaguchi, Y., Kato, K., Tsukihara, T., Tanaka, K.

(2004) Nat Struct Mol Biol 11: 365-370

Released	2004-04-06
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus
Macromolecule	F-box only protein 2 (protein)
Unique branched monosaccharides	NAG, NDG

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2ZNR \| pdb_00002znr	Download File View File

Crystal structure of the DUB domain of human AMSH-LP

Sato, Y., Azusa, Y., Yamagata, A., Mimura, H., Wang, X., Yamashita, M., Ookata, K., Nureki, O., Iwai, K., Komada, M., Fukai, S.

(2008) Nature 455: 358-362

Released	2008-09-02
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Homo sapiens
Macromolecule	AMSH-like protease (protein)
Unique Ligands	EDO, PR, ZN

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2ZNV \| pdb_00002znv	Download File View File

Crystal structure of human AMSH-LP DUB domain in complex with Lys63-linked ubiquitin dimer

Sato, Y., Azusa, Y., Yamagata, A., Mimura, H., Wang, X., Yamashita, M., Ookata, K., Nureki, O., Iwai, K., Komada, M., Fukai, S.

(2008) Nature 455: 358-362

Released	2008-09-02
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	AMSH-like protease (protein) Ubiquitin (protein)
Unique Ligands	EDO, ZN

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3B08 \| pdb_00003b08	Download File View File

Crystal structure of the mouse HOIL1-L-NZF in complex with linear di-ubiquitin

Sato, Y., Fujita, H., Yoshikawa, A., Yamashita, M., Yamagata, A., Kaiser, S.E., Iwai, K., Fukai, S.

(2011) Proc Natl Acad Sci U S A 108: 20520-20525

Released	2011-12-14
Method	X-RAY DIFFRACTION 1.701 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Polyubiquitin-C (protein) RanBP-type and C3HC4-type zinc finger-containing protein 1 (protein)
Unique Ligands	ZN
Unique branched monosaccharides	GLC

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3B0A \| pdb_00003b0a	Download File View File

Crystal structure of the mouse HOIL1-L-NZF in complex with linear di-ubiquitin

Sato, Y., Fujita, H., Yoshikawa, A., Yamashita, M., Yamagata, A., Kaiser, S.E., Iwai, K., Fukai, S.

(2011) Proc Natl Acad Sci U S A 108: 20520-20525

Released	2011-12-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Polyubiquitin-C (protein) RanBP-type and C3HC4-type zinc finger-containing protein 1 (protein)
Unique Ligands	TAM, ZN

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3WSO \| pdb_00003wso	Download File View File

Crystal structure of the Skp1-FBG3 complex

Kumanomidou, T., Nishio, K., Takagi, K., Nakagawa, T., Suzuki, A., Yamane, T., Tokunaga, F., Iwai, K., Murakami, A., Yoshida, Y., Tanaka, K., Mizushima, T.

(2015) PLoS One 10: e0140366-e0140366

Released	2015-03-25
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	F-box only protein 44 (protein) S-phase kinase-associated protein 1 (protein)

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4OWF \| pdb_00004owf	Download File View File

Crystal structure of the NEMO CoZi in complex with HOIP NZF1 domain

Rahighi, S., Fujita, H., Kawasaki, M., Kato, R., Iwai, K., Wakatsuki, S.

(2014) Mol Cell Biol 34: 1322-1335

Released	2014-02-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	E3 ubiquitin-protein ligase RNF31 (protein) NF-kappa-B essential modulator (protein)
Unique Ligands	ZN

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5Y3T \| pdb_00005y3t	Download File View File

Crystal structure of hetero-trimeric core of LUBAC: HOIP double-UBA complexed with HOIL-1L UBL and SHARPIN UBL

Tokunaga, A., Fujita, H., Ariyoshi, M., Ohki, I., Tochio, H., Iwai, K., Shirakawa, M.

(2018) Cell Rep 23: 1192-1204

Released	2018-05-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus
Macromolecule	E3 ubiquitin-protein ligase RNF31 (protein) RanBP-type and C3HC4-type zinc finger-containing protein 1 (protein) Sharpin (protein)
Unique Ligands	GOL