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234,785 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Hori, T."

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Search Summary

This query matches 17 Structures.

Refinements

Structure Determination Methodology

experimental (17)

Scientific Name of Source Organism

	Cavia porcellus (5)
	Gallus gallus (5)
	Grifola frondosa (4)
	Thermus thermophilus (3)
	Enterobacteria phage RB55 (1)

Taxonomy

	Eukaryota (14)
	Bacteria (3)
	Duplodnaviria (1)

Experimental Method

X-RAY DIFFRACTION (17)

Polymer Entity Type

Protein (17)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (12)
	2.5 - 3.0 (2)
	3.0 - 3.5 (1)
	3.5 - 4.0 (1)

Release Date

	2000 - 2004 (10)
	2005 - 2009 (1)
	2010 - 2014 (5)
	2015 - 2019 (1)

Enzyme Classification Name

	Oxidoreductases (4)
	Hydrolases (5)
	Ligases (3)

Membrane Protein Annotation

	MemProtMD (1)
	OPM (1)
	PDBTM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (9)
	Cyclic (9)

SCOP Classification

	All beta proteins (4)
	Alpha and beta proteins (a/b) (4)
	Artifacts (4)
	Multi-domain proteins (alpha and beta) (3)
	Alpha and beta proteins (a+b) (4)

AllSelected

1 to 17 of 17 Structures

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1G12 \| pdb_00001g12	Download File View File

ZINC PEPTIDASE FROM GRIFOLA FRONDOSA

Hori, T., Kumasaka, T., Yamamoto, M., Nonaka, T., Tanaka, N., Hashimoto, Y., Ueki, T., Takio, K.

(2001) Acta Crystallogr D Biol Crystallogr 57: 361-368

Released	2001-03-14
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Grifola frondosa
Macromolecule	PEPTIDYL-LYS METALLOENDOPEPTIDASE (protein)
Unique Ligands	MAN, ZN

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1GE5 \| pdb_00001ge5	Download File View File

ZINC PEPTIDASE FROM GRIFOLA FRONDOSA

Hori, T., Kumasaka, T., Yamamoto, M., Nonaka, T., Tanaka, N., Hashimoto, Y., Ueki, T., Takio, K.

(2001) Acta Crystallogr D Biol Crystallogr 57: 361-368

Released	2001-03-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Grifola frondosa
Macromolecule	PEPTIDYL-LYS METALLOENDOPEPTIDASE (protein)
Unique Ligands	MAN, ZN

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1GE6 \| pdb_00001ge6	Download File View File

ZINC PEPTIDASE FROM GRIFOLA FRONDOSA

Hori, T., Kumasaka, T., Yamamoto, M., Nonaka, T., Tanaka, N., Hashimoto, Y., Ueki, T., Takio, K.

(2001) Acta Crystallogr D Biol Crystallogr 57: 361-368

Released	2001-03-14
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Grifola frondosa
Macromolecule	PEPTIDYL-LYS METALLOENDOPEPTIDASE (protein)
Unique Ligands	MAN, ZN

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1GE7 \| pdb_00001ge7	Download File View File

ZINC PEPTIDASE FROM GRIFOLA FRONDOSA

Hori, T., Kumasaka, T., Yamamoto, M., Nonaka, T., Tanaka, N., Hashimoto, Y., Ueki, T., Takio, K.

(2001) Acta Crystallogr D Biol Crystallogr 57: 361-368

Released	2001-03-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Grifola frondosa
Macromolecule	PEPTIDYL-LYS METALLOENDOPEPTIDASE (protein)
Unique Ligands	MAN, ZN

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1ULT \| pdb_00001ult	Download File View File

Crystal structure of tt0168 from Thermus thermophilus HB8

Hisanaga, Y., Ago, H., Nakatsu, T., Hamada, K., Ida, K., Kanda, H., Yamamoto, M., Hori, T., Arii, Y., Sugahara, M., Kuramitsu, S., Yokoyama, S., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) J Biological Chem 279: 31717-31726

Released	2004-07-27
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Thermus thermophilus
Macromolecule	long chain fatty acid-CoA ligase (protein)
Unique Ligands	CIT

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1V25 \| pdb_00001v25	Download File View File

Crystal structure of tt0168 from Thermus thermophilus HB8

(2004) J Biological Chem 279: 31717-31726

Released	2004-07-27
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermus thermophilus
Macromolecule	long-chain-fatty-acid-CoA synthetase (protein)
Unique Ligands	ANP, MG

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1V26 \| pdb_00001v26	Download File View File

Crystal structure of tt0168 from Thermus thermophilus HB8

(2004) J Biological Chem 279: 31717-31726

Released	2004-07-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Thermus thermophilus
Macromolecule	long-chain-fatty-acid-CoA synthetase (protein)
Unique Ligands	AMP, MG, MYR

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1V3T \| pdb_00001v3t	Download File View File

Crystal structure of leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Hori, T., Yokomizo, T., Ago, H., Sugahara, M., Ueno, G., Yamamoto, M., Kumasaka, T., Shimizu, T., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) J Biological Chem 279: 22615-22623

Released	2004-07-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Cavia porcellus
Macromolecule	leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase (protein)
Unique Ligands	NAP

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1V3U \| pdb_00001v3u	Download File View File

Crystal structure of leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase in apo form

Hori, T., Yokomizo, T., Ago, H., Sugahara, M., Ueno, G., Yamamoto, M., Kumasaka, T., Shimizu, T., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) J Biological Chem 279: 22615-22623

Released	2004-07-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Cavia porcellus
Macromolecule	leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase (protein)
Unique Ligands	CL

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1V3V \| pdb_00001v3v	Download File View File

Crystal structure of leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase complexed with NADP and 15-oxo-PGE2

Hori, T., Yokomizo, T., Ago, H., Sugahara, M., Ueno, G., Yamamoto, M., Kumasaka, T., Shimizu, T., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) J Biological Chem 279: 22615-22623

Released	2004-07-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Cavia porcellus
Macromolecule	leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase (protein)
Unique Ligands	5OP, CL, NAP

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2DM6 \| pdb_00002dm6	Download File View File

Crystal structure of anti-configuration of indomethacin and leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase complex

Hori, T., Ishijima, J., Yokomizo, T., Ago, H., Shimizu, T., Miyano, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2006) J Biochem 140: 457-466

Released	2006-11-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Cavia porcellus
Macromolecule	NADP-dependent leukotriene B4 12-hydroxydehydrogenase (protein)
Unique Ligands	IMN, NAP, TAM

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3B0B \| pdb_00003b0b	Download File View File

Crystal structure of the chicken CENP-S/CENP-X complex

Nishino, T., Takeuchi, K., Gascoigne, K.E., Suzuki, A., Hori, T., Oyama, T., Morikawa, K., Cheeseman, I.M., Fukagawa, T.

(2012) Cell 148: 487-501

Released	2012-03-07
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Gallus gallus
Macromolecule	Centromere protein S (protein) Centromere protein X (protein)

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3B0C \| pdb_00003b0c	Download File View File

Crystal structure of the chicken CENP-T histone fold/CENP-W complex, crystal form I

Nishino, T., Takeuchi, K., Gascoigne, K.E., Suzuki, A., Hori, T., Oyama, T., Morikawa, K., Cheeseman, I.M., Fukagawa, T.

(2012) Cell 148: 487-501

Released	2012-03-07
Method	X-RAY DIFFRACTION 2.201 Å
Organisms	Gallus gallus
Macromolecule	Centromere protein T (protein) Centromere protein W (protein)
Unique Ligands	CIT

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3B0D \| pdb_00003b0d	Download File View File

Crystal structure of the chicken CENP-T histone fold/CENP-W complex, crystal form II

Nishino, T., Takeuchi, K., Gascoigne, K.E., Suzuki, A., Hori, T., Oyama, T., Morikawa, K., Cheeseman, I.M., Fukagawa, T.

(2012) Cell 148: 487-501

Released	2012-03-07
Method	X-RAY DIFFRACTION 2.197 Å
Organisms	Gallus gallus
Macromolecule	Centromere protein T (protein) Centromere protein W (protein)
Unique Ligands	CIT

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3VH5 \| pdb_00003vh5	Download File View File

Crystal structure of the chicken CENP-T histone fold/CENP-W/CENP-S/CENP-X heterotetrameric complex, crystal form I

Nishino, T., Takeuchi, K., Gascoigne, K.E., Suzuki, A., Hori, T., Oyama, T., Morikawa, K., Cheeseman, I.M., Fukagawa, T.

(2012) Cell 148: 487-501

Released	2012-03-07
Method	X-RAY DIFFRACTION 2.402 Å
Organisms	Gallus gallus
Macromolecule	CENP-S (protein) CENP-T (protein) CENP-W (protein) CENP-X (protein)

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3VH6 \| pdb_00003vh6	Download File View File

Crystal structure of the chicken CENP-T histone fold/CENP-W/CENP-S/CENP-X heterotetrameric complex, crystal form II

Nishino, T., Takeuchi, K., Gascoigne, K.E., Suzuki, A., Hori, T., Oyama, T., Morikawa, K., Cheeseman, I.M., Fukagawa, T.

(2012) Cell 148: 487-501

Released	2012-03-07
Method	X-RAY DIFFRACTION 3.351 Å
Organisms	Gallus gallus
Macromolecule	CENP-S (protein) CENP-T (protein) CENP-W (protein) CENP-X (protein)

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5X33 \| pdb_00005x33	Download File View File

Leukotriene B4 receptor BLT1 in complex with BIIL260

Hori, T., Hirata, K., Yamashita, K., Kawano, Y., Yamamoto, M., Yokoyama, S.

(2018) Nat Chem Biol 14: 262-269

Released	2018-01-03
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Cavia porcellus Enterobacteria phage RB55
Macromolecule	LTB4 receptor,Lysozyme,LTB4 receptor (protein)
Unique Ligands	7Y9

1 to 17 of 17 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1G12 | pdb_00001g12

ZINC PEPTIDASE FROM GRIFOLA FRONDOSA

1GE5 | pdb_00001ge5

ZINC PEPTIDASE FROM GRIFOLA FRONDOSA

1GE6 | pdb_00001ge6

ZINC PEPTIDASE FROM GRIFOLA FRONDOSA

1GE7 | pdb_00001ge7

ZINC PEPTIDASE FROM GRIFOLA FRONDOSA

1ULT | pdb_00001ult

Crystal structure of tt0168 from Thermus thermophilus HB8

1V25 | pdb_00001v25

Crystal structure of tt0168 from Thermus thermophilus HB8

1V26 | pdb_00001v26

Crystal structure of tt0168 from Thermus thermophilus HB8

1V3T | pdb_00001v3t

Crystal structure of leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

1V3U | pdb_00001v3u

Crystal structure of leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase in apo form

1V3V | pdb_00001v3v

Crystal structure of leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase complexed with NADP and 15-oxo-PGE2

2DM6 | pdb_00002dm6

Crystal structure of anti-configuration of indomethacin and leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase complex

3B0B | pdb_00003b0b

Crystal structure of the chicken CENP-S/CENP-X complex

3B0C | pdb_00003b0c

Crystal structure of the chicken CENP-T histone fold/CENP-W complex, crystal form I

3B0D | pdb_00003b0d

Crystal structure of the chicken CENP-T histone fold/CENP-W complex, crystal form II

3VH5 | pdb_00003vh5

Crystal structure of the chicken CENP-T histone fold/CENP-W/CENP-S/CENP-X heterotetrameric complex, crystal form I

3VH6 | pdb_00003vh6

Crystal structure of the chicken CENP-T histone fold/CENP-W/CENP-S/CENP-X heterotetrameric complex, crystal form II

5X33 | pdb_00005x33

Leukotriene B4 receptor BLT1 in complex with BIIL260

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1G12 | pdb_00001g12

1GE5 | pdb_00001ge5

1GE6 | pdb_00001ge6

1GE7 | pdb_00001ge7

1ULT | pdb_00001ult

1V25 | pdb_00001v25

1V26 | pdb_00001v26

1V3T | pdb_00001v3t

1V3U | pdb_00001v3u

1V3V | pdb_00001v3v

2DM6 | pdb_00002dm6

3B0B | pdb_00003b0b

3B0C | pdb_00003b0c

3B0D | pdb_00003b0d

3VH5 | pdb_00003vh5

3VH6 | pdb_00003vh6

5X33 | pdb_00005x33