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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Caputi, L."

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Search Summary

This query matches 23 Structures.

Refinements

Structure Determination Methodology

experimental (23)

Scientific Name of Source Organism

	Catharanthus roseus (14)
	Tabernanthe iboga (4)
	Erwinia amylovora ATCC 49946 (2)
	Aneurinibacillus migulanus (1)
	Aspergillus japonicus (1)
	Nepeta sibirica (1)

Taxonomy

	Eukaryota (20)
	Bacteria (3)

Experimental Method

X-RAY DIFFRACTION (23)

Polymer Entity Type

Protein (23)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (6)
	2.0 - 2.5 (10)
	2.5 - 3.0 (2)

Release Date

	2015 - 2019 (13)
	2020 - 2024 (10)

Enzyme Classification Name

	Oxidoreductases (7)
	Lyases (3)
	Hydrolases (1)
	Isomerases (1)
	Transferases (1)

Symmetry Type

	Cyclic (19)
	Asymmetric (3)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (2)
	Artifacts (1)

AllSelected

1 to 23 of 23 Structures

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4D47 \| pdb_00004d47	Download File View File

X-ray structure of the levansucrase from Erwinia amylovora

Wuerges, J., Caputi, L., Cianci, M., Benini, S.

(2015) J Struct Biol 191: 290

Released	2015-08-05
Method	X-RAY DIFFRACTION 2.77 Å
Organisms	Erwinia amylovora ATCC 49946
Macromolecule	LEVANSUCRASE (protein)
Unique Ligands	FRU, GLC

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4D74 \| pdb_00004d74	Download File View File

1.57 A crystal structure of erwinia amylovora tyrosine phosphatase amsI

Benini, S., Salomone-Stagni, M., Caputi, L., Cianci, M.

(2016) Acta Crystallogr Sect F Struct Biol Cryst Commun 72: 903

Released	2016-01-20
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Erwinia amylovora ATCC 49946
Macromolecule	PROTEIN-TYROSINE-PHOSPHATASE AMSI (protein)
Unique Ligands	SO4

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5DCU \| pdb_00005dcu	Download File View File

Iridoid synthase from Catharanthus roseus - ternary complex with NADP+ and triethylene glycol carboxylic acid

Caputi, L., Kries, H., Stevenson, C.E.M., Kamileen, M.O., Sherden, N.H., Geu-Flores, F., Lawson, D.M., O'Connor, S.E.

(2016) Nat Chem Biol 12: 6-8

Released	2015-10-28
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Catharanthus roseus
Macromolecule	Iridoid synthase (protein)
Unique Ligands	EDO, NAP, TEG

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5DCW \| pdb_00005dcw	Download File View File

Iridoid synthase from Catharanthus roseus - ligand free structure

Caputi, L., Kries, H., Stevenson, C.E.M., Kamileen, M.O., Sherden, N.H., Geu-Flores, F., Lawson, D.M., O'Connor, S.E.

(2016) Nat Chem Biol 12: 6-8

Released	2015-10-28
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Catharanthus roseus
Macromolecule	Iridoid synthase (protein)
Unique Ligands	EDO

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5DCY \| pdb_00005dcy	Download File View File

Iridoid synthase G150A mutant from Catharanthus roseus - binary complex with NADP+

Caputi, L., Kries, H., Stevenson, C.E.M., Kamileen, M.O., Sherden, N.H., Geu-Flores, F., Lawson, D.M., O'Connor, S.E.

(2016) Nat Chem Biol 12: 6-8

Released	2015-10-28
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Catharanthus roseus
Macromolecule	Iridoid synthase (protein)
Unique Ligands	EDO, NAP, PGE

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5DF1 \| pdb_00005df1	Download File View File

Iridoid synthase from Catharanthus roseus - ternary complex with NADP+ and geranic acid

Caputi, L., Kries, H., Stevenson, C.E.M., Kamileen, M.O., Sherden, N.H., Geu-Flores, F., Lawson, D.M., O'Connor, S.E.

(2016) Nat Chem Biol 12: 6-8

Released	2015-10-28
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Catharanthus roseus
Macromolecule	Iridoid synthase (protein)
Unique Ligands	58X, EDO, IMD, NAP

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5FI3 \| pdb_00005fi3	Download File View File

HETEROYOHIMBINE SYNTHASE THAS1 FROM CATHARANTHUS ROSEUS - COMPLEX WITH NADP+

Stavrinides, A., Tatsis, E.C., Caputi, L., Foureau, E., Stevenson, C.E.M., Lawson, D.M., Courdavault, V., O'Connor, S.E.

(2016) Nat Commun 7: 12116-12116

Released	2016-07-27
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Catharanthus roseus
Macromolecule	Tetrahydroalstonine synthase (protein)
Unique Ligands	EDO, NAP, ZN

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5FI5 \| pdb_00005fi5	Download File View File

HETEROYOHIMBINE SYNTHASE THAS1 FROM CATHARANTHUS ROSEUS - APO FORM

Stavrinides, A., Tatsis, E.C., Caputi, L., Foureau, E., Stevenson, C.E.M., Lawson, D.M., Courdavault, V., O'Connor, S.E.

(2016) Nat Commun 7: 12116-12116

Released	2016-07-27
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Catharanthus roseus
Macromolecule	Tetrahydroalstonine synthase (protein)
Unique Ligands	PO4, ZN

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5H81 \| pdb_00005h81	Download File View File

HETEROYOHIMBINE SYNTHASE THAS2 FROM CATHARANTHUS ROSEUS - COMPLEX WITH NADP+

Stavrinides, A., Tatsis, E.C., Caputi, L., Foureau, E., Stevenson, C.E.M., Lawson, D.M., Courdavault, V., O'Connor, S.E.

(2016) Nat Commun 7: 12116-12116

Released	2016-07-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Catharanthus roseus
Macromolecule	heteroyohimbine synthase THAS2 (protein)
Unique Ligands	NAP, ZN

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5H82 \| pdb_00005h82	Download File View File

HETEROYOHIMBINE SYNTHASE THAS2 FROM CATHARANTHUS ROSEUS - APO FORM

Stavrinides, A., Tatsis, E.C., Caputi, L., Foureau, E., Stevenson, C.E.M., Lawson, D.M., Courdavault, V., O'Connor, S.E.

(2016) Nat Commun 7: 12116-12116

Released	2016-07-27
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Catharanthus roseus
Macromolecule	heteroyohimbine synthase THAS2 (protein)
Unique Ligands	ZN

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5H83 \| pdb_00005h83	Download File View File

HETEROYOHIMBINE SYNTHASE HYS FROM CATHARANTHUS ROSEUS - APO FORM

Stavrinides, A., Tatsis, E.C., Caputi, L., Foureau, E., Stevenson, C.E.M., Lawson, D.M., Courdavault, V., O'Connor, S.E.

(2016) Nat Commun 7: 12116-12116

Released	2016-07-27
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Catharanthus roseus
Macromolecule	heteroyohimbine synthase HYS (protein)
Unique Ligands	ZN

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5M0T \| pdb_00005m0t	Download File View File

Alpha-ketoglutarate-dependent non-heme iron oxygenase EasH

Jakubczyk, D., Caputi, L., Stevenson, C.E.M., Lawson, D.M., O'Connor, S.E.

(2016) Chem Commun (Camb) 52: 14306-14309

Released	2016-12-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Aspergillus japonicus
Macromolecule	Alpha-ketoglutarate-dependent non-heme iron oxygenase EasH (protein)
Unique Ligands	AKG, FE2, ZN

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5O98 \| pdb_00005o98	Download File View File

Binary complex of Catharanthus roseus Vitrosamine Synthase with NADP+

Stavrinides, A.K., Tatsis, E.C., Dang, T.T., Caputi, L., Stevenson, C.E.M., Lawson, D.M., Schneider, B., O'Connor, S.E.

(2018) Chembiochem 19: 940-948

Released	2018-02-21
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Catharanthus roseus
Macromolecule	Alcohol dehydrogenase 1 (protein)
Unique Ligands	NAP

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6RJ8 \| pdb_00006rj8	Download File View File

Structure of the alpha-beta hydrolase CorS from Tabernathe iboga

Farrow, S.C., Caputi, L., Kamileen, M.O., Bussey, K., Stevenson, C.E.M., Mundy, J., Lawson, D.M., O'Connor, S.E.

(2020) Nat Chem Biol 16: 383-386

Released	2020-03-04
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	Tabernanthe iboga
Macromolecule	alpha-beta hydrolase CorS (protein)
Unique Ligands	EDO, PEG, PG4

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6RS4 \| pdb_00006rs4	Download File View File

Structure of tabersonine synthase - an alpha-beta hydrolase from Catharanthus roseus

Caputi, L., Franke, J., Bussey, K., Farrow, S.C., Curcino Vieira, I.J., Stevenson, C.E.M., Lawson, D.M., O'Connor, S.E.

(2020) Nat Chem Biol 16: 383-386

Released	2020-03-04
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Catharanthus roseus
Macromolecule	Tabersonine synthase (protein)
Unique Ligands	EDO

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6RT8 \| pdb_00006rt8	Download File View File

Structure of catharanthine synthase - an alpha-beta hydrolase from Catharanthus roseus with a cleaviminium intermediate bound

Caputi, L., Franke, J., Bussey, K., Farrow, S.C., Curcino Vieira, I.J., Stevenson, C.E.M., Lawson, D.M., O'Connor, S.E.

(2020) Nat Chem Biol 16: 383-386

Released	2020-03-04
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Catharanthus roseus
Macromolecule	Catharanthine synthase (protein)
Unique Ligands	KJE, P6G

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7QUJ \| pdb_00007quj	Download File View File

Structure of NsNEPS2, a 7S-cis-trans nepetalactone synthase

Hernandez Lozada, N.J., Hong, B., Wood, J.C., Caputi, L., Basquin, J., Chuang, L., Kunert, M., Rodriguez Lopez, C.R., Langley, C., Zhao, D., Buell, C.R., Lichman, B.R., O'Connor, S.E.

(2022) Nat Commun 13: 4718-4718

Released	2022-12-28
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Nepeta sibirica
Macromolecule	NsNEPS2 (protein)
Unique Ligands	NAD

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8A3N \| pdb_00008a3n	Download File View File

Geissoschizine synthase from Catharanthus roseus - binary complex with NADP+

Langley, C., Tatsis, E., Hong, B., Nakamura, Y., Kamileen, M.O., Paetz, C., Stevenson, C.E.M., Basquin, J., Lawson, D.M., Caputi, L., O'Connor, S.E.

(2022) Angew Chem Int Ed Engl 61: e202210934-e202210934

Released	2022-10-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Catharanthus roseus
Macromolecule	Geissoschizine synthase (protein)
Unique Ligands	NAP, ZN

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8B1V \| pdb_00008b1v	Download File View File

Dihydroprecondylocarpine acetate synthase 2 from Tabernanthe iboga

Langley, C., Basquin, J., Caputi, L., O'Connor, S.E.

(2022) Angew Chem Int Ed Engl 61: e202210934-e202210934

Released	2022-10-19
Method	X-RAY DIFFRACTION 1.882 Å
Organisms	Tabernanthe iboga
Macromolecule	Dihydroprecondylocarpine acetate synthase 2 (protein)
Unique Ligands	ORZ, ZN

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8B25 \| pdb_00008b25	Download File View File

Dihydroprecondylocarpine acetate synthase 2 from Tabernanthe iboga - stemmadenine acetate bound structure

Langley, C., Basquin, J., Caputi, L., O'Connor, S.E.

(2022) Angew Chem Int Ed Engl 61: e202210934-e202210934

Released	2022-10-19
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Tabernanthe iboga
Macromolecule	Dihydroprecondylocarpine acetate synthase 2 (protein)
Unique Ligands	EDO, OSO, SO4, ZN

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8B26 \| pdb_00008b26	Download File View File

Dihydroprecondylocarpine acetate synthase 2 from Tabernanthe iboga

Langley, C., Basquin, J., Caputi, L., O'Connor, S.E.

(2022) Angew Chem Int Ed Engl 61: e202210934-e202210934

Released	2022-10-19
Method	X-RAY DIFFRACTION 2.42 Å
Organisms	Tabernanthe iboga
Macromolecule	Dihydroprecondylocarpine acetate synthase 2 (protein)
Unique Ligands	ZN

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8B27 \| pdb_00008b27	Download File View File

Dihydroprecondylocarpine acetate synthase from Catharanthus roseus

Langley, C., Basquin, J., Caputi, L., O'Connor, S.E.

(2022) Angew Chem Int Ed Engl 61: e202210934-e202210934

Released	2022-11-02
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Catharanthus roseus
Macromolecule	Dehydroprecondylocarpine acetate synthase (protein)
Unique Ligands	SO4