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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Batra-Safferling, R."

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Search Summary

This query matches 30 Structures.

Refinements

Structure Determination Methodology

experimental (30)

Scientific Name of Source Organism

	Foot-and-mouth disease virus (6)
	Homo sapiens (5)
	Vaccinia virus (5)
	Corticovirus PM2 (4)
	Enterobacteria phage PRD1 (2)
	Escherichia coli (2)
	Foot-and-mouth disease virus O (2)
	Saccharolobus shibatae (2)
	Saccharolobus solfataricus (2)
	human respiratory syncytial virus (2)

More...

Taxonomy

	Varidnaviria (11)
	Riboviria (9)
	Archaea (6)
	Eukaryota (5)
	Bacteria (2)
	Singelaviria (1)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (21)
	ELECTRON MICROSCOPY (9)

Polymer Entity Type

	Protein (28)
	DNA (3)
	RNA (2)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (3)
	2.0 - 2.5 (5)
	2.5 - 3.0 (5)
	3.0 - 3.5 (4)
	3.5 - 4.0 (5)
	4.0 - 4.5 (2)
	> 4.5 (5)

Release Date

	2000 - 2004 (3)
	2005 - 2009 (10)
	2010 - 2014 (4)
	2015 - 2019 (11)
	2020 - 2024 (2)

Enzyme Classification Name

Transferases (3)

Symmetry Type

	Cyclic (9)
	Asymmetric (12)
	Icosahedral (9)

SCOP Classification

	All beta proteins (7)
	Low resolution protein structures (1)

AllSelected

1 to 25 of 30 Structures

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1GQU \| pdb_00001gqu	Download File View File

Crystal structure of an alternating A-T oligonucleotide fragment with Hoogsteen base pairing

Abrescia, N.G.A., Thompson, A., Huynh-Dinh, T., Subirana, J.A.

(2002) Proc Natl Acad Sci U S A 99: 2806

Released	2002-12-05
Method	X-RAY DIFFRACTION 2.5 Å
Macromolecule	DNA (5'(APTPAPUPAPT)-3') (nucleic acid)

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1RSB \| pdb_00001rsb	Download File View File

X-ray study of the DNA oligomer d(ATATAT) in P65 space group

Abrescia, N.G., Gonzalez, C., Gouyette, C., Subirana, J.A.

(2004) Biochemistry 43: 4092-4100

Released	2004-05-25
Method	X-RAY DIFFRACTION 2.17 Å
Macromolecule	5'-D(APTPAPTPAPT)-3' (nucleic acid)

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1W8X \| pdb_00001w8x	Download File View File

Structural analysis of PRD1

Abrescia, N.G.A., Cockburn, J.J.B., Grimes, J.M., Sutton, G.C., Diprose, J.M., Butcher, S.J., Fuller, S.D., San Martin, C., Burnett, R.M., Stuart, D.I., Bamford, D.H., Bamford, J.K.H.

(2004) Nature 432: 68

Released	2004-11-11
Method	X-RAY DIFFRACTION 4.2 Å
Organisms	Enterobacteria phage PRD1
Macromolecule	MAJOR CAPSID PROTEIN (PROTEIN P3) (protein) PROTEIN P16 (protein) PROTEIN P30 (protein) PROTEIN P31 (protein)

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2UXE \| pdb_00002uxe	Download File View File

The structure of Vaccinia virus N1

Cooray, S., Bahar, M.W., Abrescia, N.G.A., McVey, C.E., Bartlett, N.W., Chen, R.A.-J., Stuart, D.I., Grimes, J.M., Smith, G.L.

(2007) J Gen Virol 88: 1656

Released	2007-05-22
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Vaccinia virus
Macromolecule	HYPOTHETICAL PROTEIN (protein)

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2VGA \| pdb_00002vga	Download File View File

The structure of Vaccinia virus A41

Bahar, M.W., Kenyon, J.C., Putz, M.M., Abrescia, N.G.A., Pease, J.E., Wise, E.L., Stuart, D.I., Smith, G.L., Grimes, J.M.

(2008) PLoS Pathog 4: E5

Released	2008-02-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Vaccinia virus
Macromolecule	PROTEIN A41 (protein)

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2VVD \| pdb_00002vvd	Download File View File

Crystal structure of the receptor binding domain of the spike protein P1 from bacteriophage PM2

Abrescia, N.G.A., Grimes, J.M., Kivela, H.K., Assenberg, R., Sutton, G.C., Butcher, S.J., Bamford, J.K.H., Bamford, D.H., Stuart, D.I.

(2008) Mol Cell 31: 749

Released	2008-09-16
Method	X-RAY DIFFRACTION 2.26 Å
Organisms	Corticovirus PM2
Macromolecule	SPIKE PROTEIN P1 (protein)
Unique Ligands	CA

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2VVE \| pdb_00002vve	Download File View File

Crystal structure of the stem and receptor binding domain of the spike protein P1 from bacteriophage PM2

Abrescia, N.G.A., Grimes, J.M., Kivela, H.K., Assenberg, R., Sutton, G.C., Butcher, S.J., Bamford, J.K.H., Bamford, D.H., Stuart, D.I.

(2008) Mol Cell 31: 749

Released	2008-09-16
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Corticovirus PM2
Macromolecule	SPIKE PROTEIN P1 (protein)
Unique Ligands	CA, CL

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2VVF \| pdb_00002vvf	Download File View File

Crystal structure of the major capsid protein P2 from Bacteriophage PM2

Abrescia, N.G.A., Grimes, J.M., Kivela, H.K., Assenberg, R., Sutton, G.C., Butcher, S.J., Bamford, J.K.H., Bamford, D.H., Stuart, D.I.

(2008) Mol Cell 31: 749

Released	2008-09-16
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Corticovirus PM2
Macromolecule	MAJOR CAPSID PROTEIN P2 (protein)
Unique Ligands	CA

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2VVW \| pdb_00002vvw	Download File View File

Structure of Vaccinia virus protein A52

Graham, S.C., Bahar, M.W., Cooray, S., Chen, R.A.-J., Whalen, D.M., Abrescia, N.G.A., Alderton, D., Owens, R.J., Stuart, D.I., Smith, G.L., Grimes, J.M.

(2008) PLoS Pathog 4: E128

Released	2008-08-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Vaccinia virus
Macromolecule	PROTEIN A52 (protein)

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2VVX \| pdb_00002vvx	Download File View File

Structure of Vaccinia virus protein A52

Graham, S.C., Bahar, M.W., Cooray, S., Chen, R.A.-J., Whalen, D.M., Abrescia, N.G.A., Alderton, D., Owens, R.J., Stuart, D.I., Smith, G.L., Grimes, J.M.

(2008) PLoS Pathog 4: E128

Released	2008-08-26
Method	X-RAY DIFFRACTION 2.746 Å
Organisms	Vaccinia virus
Macromolecule	PROTEIN A52 (protein)

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2VVY \| pdb_00002vvy	Download File View File

Structure of Vaccinia virus protein B14

Graham, S.C., Bahar, M.W., Cooray, S., Chen, R.A.-J., Whalen, D.M., Abrescia, N.G.A., Alderton, D., Owens, R.J., Stuart, D.I., Smith, G.L., Grimes, J.M.

(2008) PLoS Pathog 4: E128

Released	2008-08-26
Method	X-RAY DIFFRACTION 2.693 Å
Organisms	Vaccinia virus
Macromolecule	PROTEIN B15 (protein)

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2W0C \| pdb_00002w0c	Download File View File

X-ray structure of the entire lipid-containing bacteriophage PM2

Abrescia, N.G.A., Grimes, J.M., Kivela, H.M., Assenberg, R., Sutton, G.C., Butcher, S.J., Bamford, J.K.H., Bamford, D.H., Stuart, D.I.

(2008) Mol Cell 31: 749

Released	2008-09-23
Method	X-RAY DIFFRACTION 7 Å
Organisms	Corticovirus PM2
Macromolecule	MAJOR CAPSID PROTEIN P2 (protein) PROTEIN 2 (protein) PROTEIN P3 (protein) PROTEIN P6 (protein)
Unique Ligands	CA

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2WB1 \| pdb_00002wb1	Download File View File

The complete structure of the archaeal 13-subunit DNA-directed RNA Polymerase

Korkhin, Y., Unligil, U.M., Littlefield, O., Nelson, P.J., Stuart, D.I., Sigler, P.B., Bell, S.D., Abrescia, N.G.A.

(2009) PLoS Biol 7: E102

Released	2009-05-19
Method	X-RAY DIFFRACTION 3.52 Å
Organisms	Saccharolobus shibatae
Macromolecule	Unique protein chains: 13
Unique Ligands	F3S, MG, ZN

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2YHM \| pdb_00002yhm	Download File View File

Structure of respiratory syncytial virus nucleocapsid protein, P212121 crystal form

El Omari, K., Dhaliwal, B., Ren, J., Abrescia, N.G.A., Lockyer, M., Powell, K.L., Hawkins, A.R., Stammers, D.K.

(2011) Acta Crystallogr Sect F Struct Biol Cryst Commun 67: 1179

Released	2012-01-25
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Escherichia coli human respiratory syncytial virus
Macromolecule	NUCLEOPROTEIN (protein) RNA (nucleic acid)

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4AYB \| pdb_00004ayb	Download File View File

RNAP at 3.2Ang

Wojtas, M.N., Mogni, M., Millet, O., Bell, S.D., Abrescia, N.G.A.

(2012) Nucleic Acids Res 40: 9941

Released	2012-08-08
Method	X-RAY DIFFRACTION 3.202 Å
Organisms	Saccharolobus shibatae
Macromolecule	Unique protein chains: 13
Unique Ligands	MG, SF4, ZN

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4V5V \| pdb_00004v5v	Download File View File

Structure of respiratory syncytial virus nucleocapsid protein, P1 crystal form

El Omari, K., Dhaliwal, B., Ren, J., Abrescia, N.G.A., Lockyer, M., Powell, K.L., Hawkins, A.R., Stammers, D.K.

(2011) Acta Crystallogr Sect F Struct Biol Cryst Commun 67: 1179

Released	2014-07-09
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Escherichia coli human respiratory syncytial virus
Macromolecule	RESPIRATORY SYNCYTIAL VIRUS NUCLEOCAPSID PROTEIN (protein) RNA (nucleic acid)

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4V8S \| pdb_00004v8s	Download File View File

Archaeal RNAP-DNA binary complex at 4.32Ang

Wojtas, M.N., Mogni, M., Millet, O., Bell, S.D., Abrescia, N.G.A.

(2012) Nucleic Acids Res 40: 9941

Released	2014-07-09
Method	X-RAY DIFFRACTION 4.323 Å
Organisms	Saccharolobus shibatae B12 synthetic construct
Macromolecule	Unique protein chains: 13 Unique nucleic acid chains: 2
Unique Ligands	MG, SF4, ZN

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5N35 \| pdb_00005n35	Download File View File

Gadolinium phased PBP2 (SSO6202) at 2.2 Ang

Yan, J., Beattie, T.R., Rojas, A.L., Schermerhorn, K., Gristwood, T., Trinidad, J.C., Albers, S.V., Roversi, P., Gardner, A.F., Abrescia, N.G.A., Bell, S.D.

(2017) Nat Commun 8: 15075-15075

Released	2017-05-17
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Saccharolobus solfataricus
Macromolecule	PolB1 Binding Protein 2 (PBP2) (protein)
Unique Ligands	GD, GOL, NO3

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5N41 \| pdb_00005n41	Download File View File

Archaeal DNA polymerase holoenzyme - SSO6202 at 1.35 Ang resolution

Yan, J., Beattie, T.R., Rojas, A.L., Schermerhorn, K., Gristwood, T., Trinidad, J.C., Albers, S.V., Roversi, P., Gardner, A.F., Abrescia, N.G.A., Bell, S.D.

(2017) Nat Commun 8: 15075-15075

Released	2017-05-17
Method	X-RAY DIFFRACTION 1.351 Å
Organisms	Saccharolobus solfataricus
Macromolecule	PolB1 Binding Protein 2 (protein)
Unique Ligands	EDO

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5NE4 \| pdb_00005ne4	Download File View File

Crystal Structure of Foot and Mouth Disease Virus O PanAsia

Kotecha, A., StuarT, D.

(2017) Nat Commun 8: 15408-15408

Released	2017-06-14
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Foot-and-mouth disease virus Foot-and-mouth disease virus O
Macromolecule	O PanAsia VP1 (protein) O PanAsia VP2 (protein) O PanAsia VP4 (protein) Polyprotein (protein)

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5NED \| pdb_00005ned	Download File View File

CryoEM Structure of Foot and Mouth Disease Virus O PanAsia

Kotecha, A., Stuart, D.

(2017) Nat Commun 8: 15408-15408

Released	2017-06-21
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Foot-and-mouth disease virus
Macromolecule	O PanAsia VP1 (protein) O PanAsia VP2 (protein) O PanAsia VP3 (protein) O PanAsia VP4 (protein)

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5NEJ \| pdb_00005nej	Download File View File

CryoEM Structure of Foot and Mouth Disease Virus O1 Manisa

Kotecha, A., Stuart, D.

(2017) Nat Commun 8: 15408-15408

Released	2017-06-21
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Foot-and-mouth disease virus
Macromolecule	O1 Manisa VP1 (protein) O1 Manisa VP2 (protein) O1 Manisa VP3 (protein)

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5NEM \| pdb_00005nem	Download File View File

Localised reconstruction of alpha v beta 6 bound to Foot and Mouth Disease Virus O PanAsia - Pose A.

Kotecha, A., Stuart, D.

(2017) Nat Commun 8: 15408-15408

Released	2017-06-21
Method	ELECTRON MICROSCOPY 10.8 Å
Organisms	Foot-and-mouth disease virus O Homo sapiens
Macromolecule	Unique protein chains: 6
Unique Ligands	CA, MAN, NAG
Unique branched monosaccharides	MAN, NAG

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5NER \| pdb_00005ner	Download File View File

Localised reconstruction of alpha v beta 6 bound to Foot and Mouth Disease Virus O PanAsia - Pose A prime.

Kotecha, A., Stuart, D.

(2017) Nat Commun 8: 15408-15408

Released	2017-06-21
Method	ELECTRON MICROSCOPY 11.5 Å
Organisms	Foot-and-mouth disease virus Homo sapiens
Macromolecule	Unique protein chains: 6
Unique Ligands	CA, MAN, NAG
Unique branched monosaccharides	MAN, NAG

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5NET \| pdb_00005net	Download File View File

Localised Reconstruction of Integrin alpha V beta 6 bound to Foot and Mouth Disease Virus O1 Manisa - Pose A.

Kotecha, A., Stuart, D.

(2017) Nat Commun 8: 15408-15408

Released	2017-06-21
Method	ELECTRON MICROSCOPY 8.6 Å
Organisms	Foot-and-mouth disease virus Homo sapiens
Macromolecule	Unique protein chains: 6
Unique Ligands	CA, MAN, NAG
Unique branched monosaccharides	MAN, NAG

1 to 25 of 30 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1GQU | pdb_00001gqu

1RSB | pdb_00001rsb

1W8X | pdb_00001w8x

2UXE | pdb_00002uxe

2VGA | pdb_00002vga

2VVD | pdb_00002vvd

2VVE | pdb_00002vve

2VVF | pdb_00002vvf

2VVW | pdb_00002vvw

2VVX | pdb_00002vvx

2VVY | pdb_00002vvy

2W0C | pdb_00002w0c

2WB1 | pdb_00002wb1

2YHM | pdb_00002yhm

4AYB | pdb_00004ayb

4V5V | pdb_00004v5v

4V8S | pdb_00004v8s

5N35 | pdb_00005n35

5N41 | pdb_00005n41

5NE4 | pdb_00005ne4

5NED | pdb_00005ned

5NEJ | pdb_00005nej

5NEM | pdb_00005nem

5NER | pdb_00005ner

5NET | pdb_00005net