Ligand validation:5VZ8


UTP: URIDINE 5'-TRIPHOSPHATE

UTP is a Ligand Of Interest in 5VZ8 designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5VZ8_UTP_A_504Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5VZ8_UTP_A_504Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5VZ8_UTP_A_504Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
5VZ8_UTP_A_504 95% 43% 0.08 0.9821.01 1.2 1 200100%1
5VZE_UTP_A_505 97% 36% 0.066 0.9831.1 1.4 1 300100%1
5VZH_UTP_A_506 96% 45% 0.081 0.9880.93 1.17 1 200100%1
5VZB_UTP_A_506 95% 43% 0.074 0.9781.05 1.17 1 100100%1
6AEH_UTP_A_503 77% 60% 0.11 0.9490.7 0.84 - -00100%1
3HIY_UTP_B_502 100% 19% 0.028 0.9941.43 2.03 2 610100%1
4JST_UTP_B_202 98% 24% 0.052 0.9780.97 2.09 1 300100%1
7X4Q_UTP_B_401 96% 6% 0.081 0.9883.79 1.25 5 200100%1