Ligand validation:3UG8


NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE

NAP is a Ligand Of Interest in 3UG8 designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter3UG8_NAP_A_1001Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter3UG8_NAP_A_1001Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter3UG8_NAP_A_1001Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
3UG8_NAP_A_1001 99% 21% 0.056 0.9871.85 1.44 13 720100%1
8BBS_NAP_B_401 99% 38% 0.054 0.9880.99 1.42 3 910100%1
3R8H_NAP_A_700 99% 25% 0.058 0.9861.68 1.41 10 650100%1
2FGB_NAP_A_700 98% 17% 0.057 0.9811.87 1.74 5 220100%1
3UWE_NAP_A_700 98% 20% 0.059 0.9831.63 1.75 10 820100%1
3UGR_NAP_A_1001 98% 26% 0.06 0.9821.61 1.4 9 930100%1
2DBQ_NAP_A_401 100% 24% 0.017 0.9981.42 1.71 7 1600100%1
2EXX_NAP_A_3698 100% 10% 0.025 0.9961.63 2.7 7 18 90100%1
2X9G_NAP_B_1269 100% 46% 0.031 0.9970.96 1.14 1 500100%1
2J8T_NAP_A_1316 100% 49% 0.033 0.9960.97 1.01 3 210100%1
3LQL_NAP_A_500 100% 43% 0.035 0.9961.13 1.07 3 410100%1