Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad6kyja2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Rice (Oryza sativa ) [TaxId: 4530 ], SCOPe (2.08)
Ad6kyja1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase Rice (Oryza sativa ) [TaxId: 4530 ], SCOPe (2.08)
C [auth E]d6kyje2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Rice (Oryza sativa ) [TaxId: 4530 ], SCOPe (2.08)
C [auth E]d6kyje1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase Rice (Oryza sativa ) [TaxId: 4530 ], SCOPe (2.08)
E [auth C]d6kyjc2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Rice (Oryza sativa ) [TaxId: 4530 ], SCOPe (2.08)
E [auth C]d6kyjc1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase Rice (Oryza sativa ) [TaxId: 4530 ], SCOPe (2.08)
Gd6kyjg2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel RuBisCo, C-terminal domain RuBisCo, large subunit, C-terminal domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Rice (Oryza sativa ) [TaxId: 4530 ], SCOPe (2.08)
Gd6kyjg1 Alpha and beta proteins (a+b) Ferredoxin-like RuBisCO, large subunit, small (N-terminal) domain Ribulose 1,5-bisphosphate carboxylase-oxygenase Ribulose 1,5-bisphosphate carboxylase-oxygenase Rice (Oryza sativa ) [TaxId: 4530 ], SCOPe (2.08)
F [auth U]d6kyju_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches Sorghum (Sorghum bicolor ) [TaxId: 4558 ], SCOPe (2.08)
H [auth Y]d6kyjy_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches Sorghum (Sorghum bicolor ) [TaxId: 4558 ], SCOPe (2.08)
B [auth S]d6kyjs_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches Sorghum (Sorghum bicolor ) [TaxId: 4558 ], SCOPe (2.08)
D [auth W]d6kyjw_ Alpha and beta proteins (a+b) RuBisCO, small subunit RuBisCO, small subunit automated matches automated matches Sorghum (Sorghum bicolor ) [TaxId: 4558 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
F [auth U]SCOP2 FamilyRuBisCO, small subunit 8097671 4001455 SCOP2 (2022-06-29)
F [auth U]SCOP2 SuperfamilyRuBisCO, small subunit 8097672 3001622 SCOP2 (2022-06-29)
H [auth Y]SCOP2B SuperfamilyRuBisCO, small subunit 8097672 3001622 SCOP2B (2022-06-29)
B [auth S]SCOP2B SuperfamilyRuBisCO, small subunit 8097672 3001622 SCOP2B (2022-06-29)
D [auth W]SCOP2B SuperfamilyRuBisCO, small subunit 8097672 3001622 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ARuBisCO_large_Ne6kyjA1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
ARuBisCO_largee6kyjA2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
C [auth E]RuBisCO_large_Ne6kyjE2 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
C [auth E]RuBisCO_largee6kyjE1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
E [auth C]RuBisCO_large_Ne6kyjC2 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
E [auth C]RuBisCO_largee6kyjC1 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
GRuBisCO_large_Ne6kyjG1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
GRuBisCO_largee6kyjG2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
F [auth U]RuBisCO_smalle6kyjU1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
H [auth Y]RuBisCO_smalle6kyjY1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
B [auth S]RuBisCO_smalle6kyjS1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)
D [auth W]RuBisCO_smalle6kyjW1 A: a+b two layersX: Reverse ferredoxinH: RuBisCO, small subunit (From Topology)T: RuBisCO, small subunitF: RuBisCO_smallECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A,
C [auth E],
E [auth C],
G
PF02788Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N)Ribulose bisphosphate carboxylase large chain, N-terminal domainThe N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold.Domain
A,
C [auth E],
E [auth C],
G
PF00016Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large)Ribulose bisphosphate carboxylase large chain, catalytic domainThe C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold.Domain
B [auth S],
D [auth W],
F [auth U],
H [auth Y]
PF00101Ribulose bisphosphate carboxylase, small chain (RuBisCO_small)Ribulose bisphosphate carboxylase, small chain- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A,
C [auth E],
E [auth C],
G
Ribulose bisphosphate carboxylase large chain
B [auth S],
D [auth W],
F [auth U],
H [auth Y]
Ribulose bisphosphate carboxylase small chain